Factsheet for VIT_05s0077g00570.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G49610.1	VIT_18s0001g14860.t01	AT5G42190.1	14749489

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099170.1.1	Tomato	cytosol	35.76	64.94
KRH11897	Soybean	cytosol	61.39	62.18
PGSC0003DMT400011756	Potato	cytosol	70.57	61.94
KRH36935	Soybean	cytosol	70.25	61.67
AT5G49610.1	Thale cress	cytosol	68.04	59.89
CDY05613	Canola	cytosol	64.24	56.39
Bra020625.1-P	Field mustard	cytosol	64.24	55.92
CDY33892	Canola	cytosol	63.61	55.37
GSMUA_Achr8P06320_001	Banana	cytosol, peroxisome, plastid	50.32	47.04
VIT_17s0000g05010.t01	Wine grape	cytosol	26.9	16.44

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	ProteinID:CCB47952	ProteinID:CCB47952.1	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6H705	EMBL:FN595246	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146
InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PANTHER:PTHR31264	PANTHER:PTHR31264:SF16	SMART:SM00256
SUPFAM:SSF63825	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000210900B	ArrayExpress:VIT_05s0077g00570	EnsemblPlantsGene:VIT_05s0077g00570
EnsemblPlants:VIT_05s0077g00570.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:379417..380758

Molecular Weight (calculated)

36084.7 Da

IEP (calculated)

8.459

GRAVY (calculated)

-0.028

Length

316 amino acids

Sequence
(BLAST)

001: MNSGVFPEEV ILQILARLPV KSVFRSKCVC TLWYKLCSDK YFVRASCNGL LCCSSIPDKG VYYVINPETR EYRLLPKSRE RPVTRFYPDG EATLIGLACD
101: LSGQKYNVVL AGNHRCFGQR PEKMFICLVF DSESNKWRKF VSLQDEQFTH MNKNQVVFLN GSLHWLTASC SCVLALDLDG EVWKKIKLPD EVGYGSGNRV
201: YLLDYDGCLS VIQISDASMN IWVLKDYEMG EWNLVDRVSL QCIRGLVPGV FPISQTGEYV FFATYKQVLV YRRNGGVWKE MYSVKGSFPL PLWFSAHAFR
301: RSLFSSLSGI FSSYHG

Best Arabidopsis Sequence Match ( AT5G49610.1 )
(BLAST)

001: MDNQKGALFP DEVILQILAR LPVKSLFRFK SVCKSWYRLP SDKYFTSLFN QLSVKEQLLV AEVSDSSSLI CVDNLRGVSE LSLDFVRDRV RIRVSSNGLL
101: CCSSIPEKGV YYVCNPSTRE YRKLPKSRER PVTRFYPDGE ATLVGLACDL SKNKFNVVLA GYHRSFGQRP DGSFICLVFD SESNKWRKFV SVLEECSFTH
201: MSKNQVVFVN GMLHWLMSGL CYILALDVEH DVWRKISLPD EIRIGNGGGN RVYLLESDGF LSVIQLSDVW MKIWKMSEYE TETWSVVDSI SLRCIKGLVP
301: GIFPICQTGE YVFLATHKQV LVYQRRSKLW KEMFSVKGSS SLPLWFSAHA FRSTIVPCN

Arabidopsis Description

F-box protein At5g49610 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGY4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.