Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020625.1-P | Field mustard | cytosol | 96.97 | 96.97 |
| CDY05613 | Canola | cytosol | 94.77 | 95.56 |
| AT5G49610.1 | Thale cress | cytosol | 84.85 | 85.79 |
| KRH36935 | Soybean | cytosol | 65.56 | 66.11 |
| KRH11897 | Soybean | cytosol | 55.65 | 64.74 |
| PGSC0003DMT400011756 | Potato | cytosol | 63.91 | 64.44 |
| VIT_05s0077g00570.t01 | Wine grape | cytosol | 55.37 | 63.61 |
| Solyc12g099170.1.1 | Tomato | cytosol | 29.48 | 61.49 |
| GSMUA_Achr8P06320_001 | Banana | cytosol, peroxisome, plastid | 48.76 | 52.37 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | UniProt:A0A078H8M4 | EnsemblPlants:CDY33892 | ProteinID:CDY33892 | ProteinID:CDY33892.1 |
| InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00055394001 | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | PFAM:PF12937 | PFscan:PS50181 | PANTHER:PTHR31264 |
| PANTHER:PTHR31264:SF16 | SMART:SM00256 | SUPFAM:SSF50965 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0004EEBD73 |
Description
BnaA02g30950DBnaA02g30950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8M4]
Coordinates
chrLK032324:+:59784..62255
Molecular Weight (calculated)
41236.3 Da
IEP (calculated)
8.166
GRAVY (calculated)
0.131
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNPKDPLFP DEVILQILAR LPVKSLFRFK SVCKAWCLLP SDAYFITLFN QLSVKEQTLV AEVSDSSSLI CVDSLRGVSE FSLEFLRDRV RIRASCNGLL
101: CCASVPEKGV YYVCNPSTRE FWVLPRSRER PVTRFYPDGE ATLVGLACDV GKKGFCVVMA GYHRLFGHRP DGSFVCLVFD SESNKWRKFV SALEGCGGFT
201: HMSKNQVVFV DGKLHWLMSG LCYVLALDLE HDVWRKVSLP DEIRCGDGGG NRVYLLELDG FVSVIQLSDV WMKIWKMRDY ESEVWCVVDS ISLRCIKGLV
301: PGIFPICQTG EYVFLATHKQ VLVYQRRSKL WKEMFCVKGS YSLPLWFSAH AFRSTIVPCN YAL
101: CCASVPEKGV YYVCNPSTRE FWVLPRSRER PVTRFYPDGE ATLVGLACDV GKKGFCVVMA GYHRLFGHRP DGSFVCLVFD SESNKWRKFV SALEGCGGFT
201: HMSKNQVVFV DGKLHWLMSG LCYVLALDLE HDVWRKVSLP DEIRCGDGGG NRVYLLELDG FVSVIQLSDV WMKIWKMRDY ESEVWCVVDS ISLRCIKGLV
301: PGIFPICQTG EYVFLATHKQ VLVYQRRSKL WKEMFCVKGS YSLPLWFSAH AFRSTIVPCN YAL
001: MDNQKGALFP DEVILQILAR LPVKSLFRFK SVCKSWYRLP SDKYFTSLFN QLSVKEQLLV AEVSDSSSLI CVDNLRGVSE LSLDFVRDRV RIRVSSNGLL
101: CCSSIPEKGV YYVCNPSTRE YRKLPKSRER PVTRFYPDGE ATLVGLACDL SKNKFNVVLA GYHRSFGQRP DGSFICLVFD SESNKWRKFV SVLEECSFTH
201: MSKNQVVFVN GMLHWLMSGL CYILALDVEH DVWRKISLPD EIRIGNGGGN RVYLLESDGF LSVIQLSDVW MKIWKMSEYE TETWSVVDSI SLRCIKGLVP
301: GIFPICQTGE YVFLATHKQV LVYQRRSKLW KEMFSVKGSS SLPLWFSAHA FRSTIVPCN
101: CCSSIPEKGV YYVCNPSTRE YRKLPKSRER PVTRFYPDGE ATLVGLACDL SKNKFNVVLA GYHRSFGQRP DGSFICLVFD SESNKWRKFV SVLEECSFTH
201: MSKNQVVFVN GMLHWLMSGL CYILALDVEH DVWRKISLPD EIRIGNGGGN RVYLLESDGF LSVIQLSDVW MKIWKMSEYE TETWSVVDSI SLRCIKGLVP
301: GIFPICQTGE YVFLATHKQV LVYQRRSKLW KEMFSVKGSS SLPLWFSAHA FRSTIVPCN
Arabidopsis Description
F-box protein At5g49610 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGY4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.