CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68078
CDX70134
CDX72730
CDX73462
CDX76980
CDX77477
CDX78253
CDX83577
CDX84930
CDX85142
CDX85540
CDX90932
CDX98860
CDX99734
CDY03911
CDY04188
CDY05613
CDY09428
CDY12448
CDY13604
CDY15342
CDY15715
CDY17656
CDY17657
CDY18013
CDY19088
CDY21896
CDY22051
CDY22060
CDY22405
CDY27608
CDY32595
CDY33892
CDY35358
CDY36244
CDY38901
CDY39176
CDY40985
CDY41983
CDY41985
CDY42631
CDY42633
CDY48548
CDY48808
CDY49755
CDY50384
CDY52183
CDY53173
CDY55831
CDY64339
CDY65287
CDY65288
CDY66545
CDY66546
CDY67066

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10230.1	CDX76980	AT2G25490.1	12169662
AT1G10230.1	CDY35358	AT2G25490.1	12169662
AT1G10230.1	CDX73462	AT3G54650.1	19277118
AT1G10230.1	CDX78253	AT3G54650.1	19277118
AT1G10230.1	CDY55831	AT3G54650.1	19277118
AT1G10230.1	CDY64339	AT3G54650.1	19277118
AT1G10230.1	CDX90932	AT4G02570.1	16412087
AT1G10230.1	CDY18013	AT4G02570.1	16412087
AT1G10230.1	CDY21896	AT4G02570.1	16412087
AT1G10230.1	CDY22060	AT4G02570.1	16412087
AT1G10230.1	CDX72730	AT4G38940.1	12169662
AT1G10230.1	CDY22405	AT4G38940.1	12169662
AT1G10230.1	CDY05613	AT5G49610.1	14749489
AT1G10230.1	CDY33892	AT5G49610.1	14749489
AT2G03160.1	CDX84930	AT1G27340.1	12795696
AT2G03160.1	CDY03911	AT1G27340.1	12795696
AT2G03160.1	CDY15715	AT1G27340.1	12795696
AT2G03160.1	CDY27608	AT1G27340.1	12795696
AT2G03160.1	CDY12448	AT1G30950.1	12795696
AT2G03160.1	CDY52183	AT1G30950.1	12795696
AT2G03160.1	CDX68078	AT1G76920.1	12795696
AT2G03160.1	CDY48548	AT1G76920.1	12795696
AT2G03160.1	CDX90932	AT4G02570.1	16412087
AT2G03160.1	CDY18013	AT4G02570.1	16412087
AT2G03160.1	CDY21896	AT4G02570.1	16412087
AT2G03160.1	CDY22060	AT4G02570.1	16412087
AT2G03160.1	CDY32595	AT5G52120.1	12795696
AT2G03160.1	CDY38901	AT5G52120.1	12795696
AT2G03170.1	CDX84930	AT1G27340.1	12795696
AT2G03170.1	CDY03911	AT1G27340.1	12795696
AT2G03170.1	CDY15715	AT1G27340.1	12795696
AT2G03170.1	CDY27608	AT1G27340.1	12795696
AT2G03170.1	CDY12448	AT1G30950.1	12795696
AT2G03170.1	CDY52183	AT1G30950.1	12795696
AT2G03170.1	CDX68078	AT1G76920.1	12795696
AT2G03170.1	CDY48548	AT1G76920.1	12795696
AT2G03170.1	CDY09428	AT2G01620.1	12795696
AT2G03170.1	CDY17656	AT2G01620.1	12795696
AT2G03170.1	CDY17657	AT2G01620.1	12795696
AT2G03170.1	CDY36244	AT2G01620.1	12795696
AT2G03170.1	CDY48808	AT2G01620.1	12795696
AT2G03170.1	CDY49755	AT2G01620.1	12795696
AT2G03170.1	CDX70134	AT2G31470.1	18835996
AT2G03170.1	CDX98860	AT2G31470.1	18835996
AT2G03170.1	CDY15342	AT2G31470.1	18835996
AT2G03170.1	CDY19088	AT2G31470.1	18835996
AT2G03170.1	CDY65287	AT2G31470.1	18835996
AT2G03170.1	CDY65288	AT2G31470.1	18835996
AT2G03170.1	CDY66545	AT2G31470.1	18835996
AT2G03170.1	CDY66546	AT2G31470.1	18835996
AT2G03170.1	CDY67066	AT2G31470.1	18835996
AT2G03170.1	CDX83577	AT3G26000.1	12795696
AT2G03170.1	CDX99734	AT3G26000.1	12795696
AT2G03170.1	CDY04188	AT3G26000.1	12795696
AT2G03170.1	CDY13604	AT3G26000.1	12795696
AT2G03170.1	CDY39176	AT3G26000.1	12795696
AT2G03170.1	CDY40985	AT3G26000.1	12795696
AT2G03170.1	CDY22051	AT4G02440.1	16412087
AT2G03170.1	CDY50384	AT4G02440.1	16412087
AT2G03170.1	CDX90932	AT4G02570.1	16412087
AT2G03170.1	CDY18013	AT4G02570.1	16412087
AT2G03170.1	CDY21896	AT4G02570.1	16412087
AT2G03170.1	CDY22060	AT4G02570.1	16412087
AT2G03170.1	CDY41983	AT4G39550.1	14749489
AT2G03170.1	CDY41985	AT4G39550.1	14749489
AT2G03170.1	CDY42631	AT4G39550.1	14749489
AT2G03170.1	CDY42633	AT4G39550.1	14749489
AT2G03170.1	CDY53173	AT4G39550.1	14749489
AT2G03170.1	CDY05613	AT5G49610.1	14749489
AT2G03170.1	CDY33892	AT5G49610.1	14749489
AT2G03170.1	CDY32595	AT5G52120.1	12795696
AT2G03170.1	CDY38901	AT5G52120.1	12795696
AT2G03190.1	CDX77477	AT3G23880.1	21798944
AT2G03190.1	CDX85142	AT3G23880.1	21798944
AT2G03190.1	CDX90932	AT4G02570.1	16412087
AT2G03190.1	CDY18013	AT4G02570.1	16412087
AT2G03190.1	CDY21896	AT4G02570.1	16412087
AT2G03190.1	CDY22060	AT4G02570.1	16412087
AT2G03190.1	CDX85540	AT4G11590.1	12169662
AT3G25650.1	CDY22051	AT4G02440.1	16412087
AT3G25650.1	CDY50384	AT4G02440.1	16412087
AT3G25650.1	CDX90932	AT4G02570.1	16412087
AT3G25650.1	CDY18013	AT4G02570.1	16412087
AT3G25650.1	CDY21896	AT4G02570.1	16412087
AT3G25650.1	CDY22060	AT4G02570.1	16412087

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039504.1-P	Field mustard	cytosol	96.43	95.86
CDX96963	Canola	cytosol	90.48	80.42
AT2G03170.1	Thale cress	cytosol	57.14	64.43
AT1G10230.1	Thale cress	cytosol	59.52	63.29
CDX68112	Canola	cytosol	53.57	59.6
CDX85931	Canola	cytosol	53.57	59.6
CDY39073	Canola	cytosol	54.76	57.5
CDY13521	Canola	cytosol	54.76	57.5
CDX87650	Canola	cytosol	54.76	57.14
CDX73212	Canola	cytosol	54.17	56.52
AT2G03190.1	Thale cress	cytosol	55.95	55.29
CDY40610	Canola	cytosol	51.19	55.13
CDX93698	Canola	cytosol	51.19	55.13
AT3G25650.1	Thale cress	cytosol	57.74	54.8
CDY40611	Canola	cytosol	48.81	54.67
CDY44209	Canola	cytosol	51.79	54.04
CDY29370	Canola	cytosol	51.19	53.42
CDY03015	Canola	cytosol	47.62	52.98
AT2G20160.1	Thale cress	cytosol	47.02	52.67
CDX93699	Canola	cytosol	49.4	51.88
CDY04140	Canola	cytosol	48.81	51.57
CDX77280	Canola	cytosol	47.62	50.31
CDY16470	Canola	cytosol	47.02	49.69
CDY69121	Canola	cytosol	38.69	49.62
CDY17409	Canola	cytosol	46.43	49.06
CDX89042	Canola	cytosol	46.43	49.06
CDY45767	Canola	cytosol	44.05	48.05
CDY67544	Canola	cytosol	45.83	47.83
CDX80590	Canola	cytosol	45.24	47.2
CDY01389	Canola	cytosol	44.64	46.58
CDY63159	Canola	cytosol	44.64	46.58
AT2G03160.1	Thale cress	cytosol	52.38	44.0
CDY43408	Canola	cytosol	39.29	43.42
CDY68971	Canola	cytosol	38.69	42.76

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:A0A078FPY2	UniProt:A0A078FPY2	EnsemblPlants:CDY14922	ProteinID:CDY14922
ProteinID:CDY14922.1	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00084846001	PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165
PANTHER:PTHR11165:SF89	InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512
SUPFAM:SSF54695	SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniPathway:UPA00143	UniParc:UPI0004EF1E8C

Description

BnaA02g22640DBnaA02g22640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPY2]

Coordinates

chrLK032048:+:551307..556900

Molecular Weight (calculated)

18893.4 Da

IEP (calculated)

4.191

GRAVY (calculated)

-0.243

Length

168 amino acids

Sequence
(BLAST)

001: MAQNLVGLTE KLSLSSNKIV NRVSDGDSFE IDEAVARESH TIAEMLDAGC AGEIPLQNVT GKILDKVIDY CKTHVEAGLI FEEDEEAKKK LKIWKAEFMR
101: VDLETISELI LAANYLNLPG LLDLSCQTLA DYIKDKTPED VREIFNIQND FTPEEEAAVR KENVWAFE

Best Arabidopsis Sequence Match ( AT1G10230.1 )
(BLAST)

001: MSSNKILLTS SDGESFEIDE AVARKFLIIV HMMEDNCAGE AIPLENVTGD ILSKIIEYAK MHVNEPSEED EDEEAKKNLD SWDAKFMEKL DLETIFKIIL
101: AANYLNFEGL LGFASQTVAD YIKDKTPEEV REIFNIENDF TPEEEEEIRK ENAWTFNE

Arabidopsis Description

ASK18SKP1-like protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY65]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.