Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41985 | Canola | plastid | 81.45 | 84.21 |
| Bra011854.1-P | Field mustard | plastid | 82.91 | 58.61 |
| CDX86750 | Canola | cytosol | 20.73 | 50.44 |
| CDY41983 | Canola | cytosol | 46.55 | 50.2 |
| CDY53173 | Canola | nucleus, plastid | 67.27 | 49.87 |
| CDY12136 | Canola | cytosol | 13.45 | 44.58 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 16.0 | 41.51 |
| CDY09006 | Canola | nucleus | 44.73 | 40.33 |
| AT4G39550.1 | Thale cress | nucleus | 57.45 | 40.31 |
| CDY68916 | Canola | nucleus | 44.36 | 39.87 |
| CDY42631 | Canola | nucleus | 41.09 | 39.37 |
| CDY53174 | Canola | cytosol | 45.82 | 39.01 |
| CDY63148 | Canola | cytosol | 45.82 | 38.07 |
| CDY01110 | Canola | cytosol | 48.0 | 37.39 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 45.82 | 37.28 |
| CDX78384 | Canola | cytosol | 18.91 | 36.11 |
| CDX91543 | Canola | plastid | 44.73 | 35.86 |
| CDX72687 | Canola | cytosol | 42.55 | 34.93 |
| CDY29974 | Canola | plasma membrane | 41.45 | 34.55 |
| CDY16283 | Canola | cytosol | 18.18 | 34.25 |
| CDY13275 | Canola | mitochondrion | 25.09 | 33.17 |
| CDY00653 | Canola | cytosol | 39.64 | 32.93 |
| CDX99633 | Canola | mitochondrion | 44.73 | 31.38 |
| CDY15927 | Canola | cytosol | 44.36 | 31.28 |
| CDY57171 | Canola | cytosol | 36.36 | 30.49 |
| CDY51548 | Canola | plastid | 37.09 | 30.09 |
| CDY51549 | Canola | plastid | 19.64 | 29.83 |
| CDY41984 | Canola | cytosol | 41.45 | 29.77 |
| CDY42632 | Canola | cytosol | 41.45 | 29.77 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 36.73 | 29.45 |
| CDY02008 | Canola | cytosol | 39.27 | 29.27 |
| CDX75197 | Canola | cytosol | 38.55 | 28.65 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 43.27 | 28.54 |
| CDY41986 | Canola | cytosol | 42.55 | 28.4 |
| CDX72460 | Canola | extracellular | 40.36 | 28.03 |
| CDY07711 | Canola | extracellular | 35.64 | 27.84 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 37.09 | 27.64 |
| CDY36006 | Canola | cytosol | 22.18 | 27.6 |
| CDY27975 | Canola | nucleus, plastid | 32.36 | 26.81 |
| CDX98384 | Canola | plastid | 29.45 | 25.63 |
| CDY62432 | Canola | golgi | 40.36 | 25.4 |
| CDY19889 | Canola | cytosol | 32.0 | 25.14 |
| CDY66883 | Canola | extracellular | 18.55 | 24.29 |
| CDY44215 | Canola | plasma membrane | 24.0 | 23.08 |
| CDY35547 | Canola | cytosol | 21.09 | 23.02 |
| CDX81183 | Canola | cytosol | 18.18 | 21.1 |
| CDY13276 | Canola | cytosol | 25.82 | 19.4 |
| CDY49285 | Canola | golgi, plasma membrane | 36.36 | 17.09 |
| CDY41987 | Canola | plastid | 39.64 | 15.24 |
| CDY42635 | Canola | nucleus | 37.45 | 13.77 |
Protein Annotations
| EnsemblPlants:CDY42633 | EnsemblPlantsGene:GSBRNA2T00075140001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 |
| PFAM:PF00646 | ProteinID:CDY42633 | ProteinID:CDY42633.1 | SEG:seg | SMART:SM00256 | SUPFAM:SSF117281 |
| UniParc:UPI0004EF1900 | UniProt:A0A078I0N3 | MapMan:35.1 | : | : | : |
Description
BnaC01g00450DBnaC01g00450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0N3]
Coordinates
chrLK032530:-:165379..166738
Molecular Weight (calculated)
31072.1 Da
IEP (calculated)
8.890
GRAVY (calculated)
-0.342
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPVKKRKT IKKPSLKKNK ETPPLVLGPT PESTPNPSLP DDLLLSCFAR ASRLYYPTLS LVSKSFASLF ASPELYKTRS SLGRTESCLY VVSILDCRSN
101: TWRDGPSMLV ERDYPHANVI DGKIYVAGDS NSTSPDNGLA YDTREGRWES ADMEMDSEWV WYSYCVVENV IYVYNNEEFK WYDSTVRLWK VLKGLKGLPK
201: FPRYTARLAD FGGKMAVLWG RGVASSGYVD KIIWCAVIAL ERRSDQEIWG KVEWKEPVLK VPKSCSIDHA LAATV
101: TWRDGPSMLV ERDYPHANVI DGKIYVAGDS NSTSPDNGLA YDTREGRWES ADMEMDSEWV WYSYCVVENV IYVYNNEEFK WYDSTVRLWK VLKGLKGLPK
201: FPRYTARLAD FGGKMAVLWG RGVASSGYVD KIIWCAVIAL ERRSDQEIWG KVEWKEPVLK VPKSCSIDHA LAATV
001: MQSQTNPNPS LPDDLILSCV ARVSRLYYPA LSLVSKSFRS LIASPELYKT RSLLDRTESC LYILYCTSNT WHEGPRLRVK LMSCTACVLD EKIYVSGRCK
101: DGDSMTFQVF DTNTQTWDPL SVPCSETKHD FHYKIVRFDG KLHLVSYKGV DAYNSKEGRW DLVTPSIEHN KYLYDCYRNI GNVWYTIVKG DISTSVWWYH
201: SEEREWRDLK GMVGLPKFPI DACLRMVDYG GKMAVLWDDY LPGRRKKMIW CAEIALERRG SLEIWGKVEW FAHVLTVPRQ YEFVKVLAAT L
101: DGDSMTFQVF DTNTQTWDPL SVPCSETKHD FHYKIVRFDG KLHLVSYKGV DAYNSKEGRW DLVTPSIEHN KYLYDCYRNI GNVWYTIVKG DISTSVWWYH
201: SEEREWRDLK GMVGLPKFPI DACLRMVDYG GKMAVLWDDY LPGRRKKMIW CAEIALERRG SLEIWGKVEW FAHVLTVPRQ YEFVKVLAAT L
Arabidopsis Description
F-box/kelch-repeat protein At5g38670 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFV5]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.