Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53174 | Canola | cytosol | 69.55 | 72.14 |
| AT4G39580.1 | Thale cress | cytosol | 74.93 | 66.93 |
| CDY42633 | Canola | plastid | 34.93 | 42.55 |
| CDY12136 | Canola | cytosol | 10.45 | 42.17 |
| CDY53173 | Canola | nucleus, plastid | 46.57 | 42.05 |
| CDY41985 | Canola | plastid | 33.13 | 41.73 |
| CDY35547 | Canola | cytosol | 31.04 | 41.27 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 12.84 | 40.57 |
| CDY01110 | Canola | cytosol | 42.09 | 39.94 |
| CDY41984 | Canola | cytosol | 45.07 | 39.43 |
| CDY63148 | Canola | cytosol | 38.81 | 39.27 |
| CDY42632 | Canola | cytosol | 44.78 | 39.16 |
| CDY41983 | Canola | cytosol | 29.55 | 38.82 |
| CDY42631 | Canola | nucleus | 31.94 | 37.28 |
| CDX99633 | Canola | mitochondrion | 43.28 | 36.99 |
| CDY15927 | Canola | cytosol | 42.99 | 36.92 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 37.01 | 36.69 |
| CDX72460 | Canola | extracellular | 43.28 | 36.62 |
| CDX91543 | Canola | plastid | 37.31 | 36.44 |
| CDY68916 | Canola | nucleus | 33.13 | 36.27 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 45.07 | 36.21 |
| CDX86750 | Canola | cytosol | 11.94 | 35.4 |
| CDY00653 | Canola | cytosol | 34.93 | 35.35 |
| CDX75197 | Canola | cytosol | 38.81 | 35.14 |
| CDY09006 | Canola | nucleus | 31.64 | 34.75 |
| CDY41986 | Canola | cytosol | 42.39 | 34.47 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 37.01 | 33.6 |
| CDY02008 | Canola | cytosol | 35.82 | 32.52 |
| CDY51548 | Canola | plastid | 32.84 | 32.45 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 33.13 | 32.36 |
| CDY57171 | Canola | cytosol | 31.64 | 32.32 |
| CDY19889 | Canola | cytosol | 33.43 | 32.0 |
| CDY07711 | Canola | extracellular | 31.64 | 30.11 |
| CDY66883 | Canola | extracellular | 18.81 | 30.0 |
| CDY13275 | Canola | mitochondrion | 18.51 | 29.81 |
| CDY29974 | Canola | plasma membrane | 28.36 | 28.79 |
| CDX78384 | Canola | cytosol | 11.94 | 27.78 |
| CDY16283 | Canola | cytosol | 11.94 | 27.4 |
| CDX98384 | Canola | plastid | 25.67 | 27.22 |
| CDY27975 | Canola | nucleus, plastid | 26.57 | 26.81 |
| CDY62432 | Canola | golgi | 34.33 | 26.32 |
| CDY36006 | Canola | cytosol | 15.82 | 23.98 |
| CDY44215 | Canola | plasma membrane | 18.51 | 21.68 |
| CDY51549 | Canola | plastid | 11.64 | 21.55 |
| CDY49285 | Canola | golgi, plasma membrane | 36.72 | 21.03 |
| CDY13276 | Canola | cytosol | 22.09 | 20.22 |
| CDY41987 | Canola | plastid | 31.94 | 14.96 |
| CDY42635 | Canola | nucleus | 31.34 | 14.04 |
| CDX81183 | Canola | cytosol | 9.55 | 13.5 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EnsemblPlants:CDX72687 | ProteinID:CDX72687 | ProteinID:CDX72687.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00100270001 | InterPro:IPR001810 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 | PFscan:PS50181 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| UniParc:UPI0004EE7BF2 | SEG:seg | : | : | : | : |
Description
BnaC07g47090D
Coordinates
chrLK031796:+:2666815..2667951
Molecular Weight (calculated)
37826.0 Da
IEP (calculated)
7.421
GRAVY (calculated)
-0.222
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNEEASPHE QNKMVSPPTT DLSLPDDILL SFLSRVSRLY YPTFSLVSKS FRTLIASPEL YQTRSFLNRT ESCLYVCLRS LTDSNLRWFT LCRVPDRKLT
101: NFSGGHLLVP VSSSHAPPPP AHWSSVVTVD SNIYAIGGPI NDAPSSRVSF LDCRSDTWRM APPMRVARNY PTASVLDGKI YVAGGCEDCD SLNCIEVFDP
201: NTQSWESEAS HGTGGCERLV YKGIGIEGKF HLLGGASHVA YDPREGRWDS VGTEMDIGRA WVSYCVIKNI LLYYHERDRE FKWYDYKGRF WRKLMGLERL
301: VKFLCYSRVS LADYGGKMAV LWDTFVPGSA GFFLL
101: NFSGGHLLVP VSSSHAPPPP AHWSSVVTVD SNIYAIGGPI NDAPSSRVSF LDCRSDTWRM APPMRVARNY PTASVLDGKI YVAGGCEDCD SLNCIEVFDP
201: NTQSWESEAS HGTGGCERLV YKGIGIEGKF HLLGGASHVA YDPREGRWDS VGTEMDIGRA WVSYCVIKNI LLYYHERDRE FKWYDYKGRF WRKLMGLERL
301: VKFLCYSRVS LADYGGKMAV LWDTFVPGSA GFFLL
001: MNEEEAPSEQ KKTLSLVPSP TTNLFLPDDI LLSSLSRISR LYYPTFSLVS KSFRSLIASP ELYQTRSILG RTESCLYVSL RLLNDSNLRW YTLCRVPDRK
101: LTNFSGGHLL VPILSRYAPP AHWSSVVAVD YNIYAIGGPI NDAPSSSVSV LDCQCEKWRE APSMRVARNY PTATVLDGKI YVAGGCEDCT SLDCIEVFDP
201: KTQTWDSVAS PGTERCERLV YKSVGIEGKY HLFGGAGHVA YDPKEGRWDS VGMDMEMGRT WVSYCVINNI LFYYNDREFK WYDYKGRFWR KLMGLERLIK
301: FLCYSRVNLA AYGEKMAVLW DTFVPSSSKN KMIWCAEITI ERHDIYEICG KTEWFDVVLR VPKSYELVHV LAATV
101: LTNFSGGHLL VPILSRYAPP AHWSSVVAVD YNIYAIGGPI NDAPSSSVSV LDCQCEKWRE APSMRVARNY PTATVLDGKI YVAGGCEDCT SLDCIEVFDP
201: KTQTWDSVAS PGTERCERLV YKSVGIEGKY HLFGGAGHVA YDPKEGRWDS VGMDMEMGRT WVSYCVINNI LFYYNDREFK WYDYKGRFWR KLMGLERLIK
301: FLCYSRVNLA AYGEKMAVLW DTFVPSSSKN KMIWCAEITI ERHDIYEICG KTEWFDVVLR VPKSYELVHV LAATV
Arabidopsis Description
F-box/kelch-repeat protein At4g39580 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVA0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.