CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
mitochondrion 3
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000083.1-P	Field mustard	extracellular	71.17	88.35
CDY07711	Canola	extracellular	69.34	86.08
CDY36006	Canola	cytosol	28.15	55.66
CDY27975	Canola	nucleus, plastid	41.42	54.52
CDY29974	Canola	plasma membrane	39.36	52.12
AT5G51250.1	Thale cress	cytosol	38.9	46.2
AT3G08810.1	Thale cress	nucleus	36.16	46.06
CDY09006	Canola	nucleus	32.04	45.9
CDY68916	Canola	nucleus	31.58	45.1
CDY41983	Canola	cytosol	26.32	45.1
CDX78384	Canola	cytosol	14.42	43.75
CDY16283	Canola	cytosol	13.73	41.1
CDX86750	Canola	cytosol	10.53	40.71
CDX84184	Canola	cytosol, nucleus, vacuole	9.84	40.57
CDY42633	Canola	plastid	25.4	40.36
AT3G06570.1	Thale cress	cytosol, plastid	35.7	40.0
CDY00653	Canola	cytosol	29.52	38.97
CDY41985	Canola	plastid	23.57	38.72
CDY12136	Canola	cytosol	7.32	38.55
AT2G03460.1	Thale cress	plastid	22.65	38.52
CDY53173	Canola	nucleus, plastid	31.35	36.93
CDY63148	Canola	cytosol	27.23	35.95
CDY01110	Canola	cytosol	28.83	35.69
CDY16374	Canola	cytosol, nucleus, peroxisome	27.46	35.5
CDX91543	Canola	plastid	27.23	34.69
CDX72687	Canola	cytosol	26.32	34.33
CDY53174	Canola	cytosol	24.71	33.44
CDY42631	Canola	nucleus	21.28	32.4
CDX99633	Canola	mitochondrion	28.83	32.14
CDY15927	Canola	cytosol	28.38	31.79
CDY35547	Canola	cytosol	18.08	31.35
CDY42632	Canola	cytosol	27.46	31.33
CDY57171	Canola	cytosol	23.34	31.1
CDY41984	Canola	cytosol	27.23	31.07
CDX72460	Canola	extracellular	27.69	30.56
CDY42634	Canola	cytosol, nucleus, plastid	29.06	30.46
CDY49284	Canola	extracellular, plasma membrane, vacuole	25.63	30.35
CDX75197	Canola	cytosol	25.63	30.27
CDY29938	Canola	cytosol, peroxisome, plasma membrane	23.57	30.03
CDY41986	Canola	cytosol	27.69	29.37
CDY02008	Canola	cytosol	24.71	29.27
CDY51548	Canola	plastid	22.43	28.91
CDY19889	Canola	cytosol	23.11	28.86
CDY51549	Canola	plastid	11.9	28.73
CDY13275	Canola	mitochondrion	13.5	28.37
CDY66883	Canola	extracellular	13.27	27.62
CDY44215	Canola	plasma membrane	17.39	26.57
CDX81183	Canola	cytosol	12.81	23.63
CDX98384	Canola	plastid	16.7	23.1
CDY49285	Canola	golgi, plasma membrane	24.71	18.46
CDY41987	Canola	plastid	27.69	16.92
CDY13276	Canola	cytosol	13.5	16.12
CDY42635	Canola	nucleus	26.77	15.64

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078JAH5	EnsemblPlants:CDY62432	ProteinID:CDY62432	ProteinID:CDY62432.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00036262001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EF0363	SEG:seg

Description

BnaC03g72150DBnaC03g72150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAH5]

Coordinates

chrLK034143:+:4561..6560

Molecular Weight (calculated)

48574.7 Da

IEP (calculated)

9.014

GRAVY (calculated)

-0.062

Length

437 amino acids

Sequence
(BLAST)

001: MERLNKGDFV LKRKTTTTST RAKKKKPTPY TSDDVILASL SVLPDDLLVM IVARVPILYY RTLSLVSKSF RSMVVSPELY KVRSVLGLTE SCLYVCLRFG
101: MGSYKWYTLS SKSKSSGGYV LASVPMPGDD SPRVAGLGFG YSDLVAVGSD IYNIGQADKT TPTSSVSILD CKSHMWRKAP SMPVELESLS ATVLDRNIFV
201: LGRRYHQYGS WKSLLQVFNT NTQTWDIPWC VLDQASHIFN INGNLHAVNI FGWVFAFNSK QGKWDQLVEI DPIVGEIKYS ESYCEIDNVL YSVSKEGALR
301: WYDTDKTRWR DLKGLVGLPK LPGRFAGYGS YVKLTAYGGG KMLVFWSRKS CILLSHMETI YCAEIALKKG KGDCWGKLEW YDGVLSVLAG TDDMTEIDTI
401: YQMDIRLAAL HSSMAIVMGP TPPGTGVIAE ATPKASS

Best Arabidopsis Sequence Match ( AT5G51250.1 )
(BLAST)

001: MSSLPDDLLL SIFARISRLY YPTLSLVSKS FRSLLASPDL YKARSLLGHT ESCLYVCFHF DSGPNTHWFT LCRKPDGTLT NDTSKKKKSN GYVLATVPIP
101: HSPPANFSSL VAVGSDIYNI GGSIYLGPSS SSVSILDSQS HMWREAPSLR VELMSHSASV LDRKIYVAGS YKDGNGDSNS CKNLFEVFDT KTQVWHPEPI
201: PCSKTKGIFY SKSACIDGKF HVETTHGVVY AYKEGRWDKA IPTMFGMRAS YSFCEINNVL FYIHRGVFRW YDTKLRMWRI LKGLLGLPSL PENMFVRLAD
301: YGGKMAVLWE EDRPSCGAGG RDEMMIWCAV IALKRHLNFS FWGKVEWFDH VLTVPKQHVF VKALTASL

Arabidopsis Description

F-box/kelch-repeat protein At5g51250 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU49]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.