CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 2
plasma membrane 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	peroxisome, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	plasma membrane
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35547	Canola	cytosol	46.06	62.7
CDX86750	Canola	cytosol	17.49	53.1
CDY12136	Canola	cytosol	11.08	45.78
CDX84184	Canola	cytosol, nucleus, vacuole	13.12	42.45
CDY41983	Canola	cytosol	29.15	39.22
CDY41985	Canola	plastid	29.45	37.97
CDY42633	Canola	plastid	29.45	36.73
CDY53173	Canola	nucleus, plastid	38.48	35.58
CDY09006	Canola	nucleus	30.61	34.43
CDY63148	Canola	cytosol	32.94	34.14
CDY13275	Canola	mitochondrion	20.7	34.13
CDY16374	Canola	cytosol, nucleus, peroxisome	33.24	33.73
CDY68916	Canola	nucleus	30.03	33.66
CDY01110	Canola	cytosol	34.4	33.43
CDX78384	Canola	cytosol	13.99	33.33
CDY19889	Canola	cytosol	33.82	33.14
CDX72687	Canola	cytosol	32.36	33.13
CDY53174	Canola	cytosol	30.9	32.82
CDX91543	Canola	plastid	32.65	32.65
CDY00653	Canola	cytosol	31.49	32.63
CDX75197	Canola	cytosol	34.69	32.16
CDX98384	Canola	plastid	29.45	31.96
CDY41984	Canola	cytosol	35.57	31.85
CDY42632	Canola	cytosol	34.99	31.33
CDX99633	Canola	mitochondrion	35.28	30.87
CDY57171	Canola	cytosol	29.45	30.79
CDY15927	Canola	cytosol	34.69	30.51
CDY02008	Canola	cytosol	32.07	29.81
CDY51548	Canola	plastid	29.45	29.79
CDY66883	Canola	extracellular	18.08	29.52
CDY16283	Canola	cytosol	12.54	29.45
CDX72460	Canola	extracellular	33.24	28.79
CDY44215	Canola	plasma membrane	23.62	28.32
CDY41986	Canola	cytosol	33.82	28.16
CDY42634	Canola	cytosol, nucleus, plastid	33.82	27.82
CDY49284	Canola	extracellular, plasma membrane, vacuole	29.74	27.64
CDY51549	Canola	plastid	14.58	27.62
CDY29974	Canola	plasma membrane	26.53	27.58
CDY42631	Canola	nucleus	22.45	26.83
CDY07711	Canola	extracellular	27.41	26.7
CDY62432	Canola	golgi	30.03	23.57
CDY36006	Canola	cytosol	14.87	23.08
CDY27975	Canola	nucleus, plastid	22.16	22.89
CDY13276	Canola	cytosol	21.57	20.22
CDX81183	Canola	cytosol	13.12	18.99
CDY49285	Canola	golgi, plasma membrane	29.45	17.27
CDY41987	Canola	plastid	32.07	15.38
CDY42635	Canola	nucleus	31.49	14.44

Protein Annotations

EnsemblPlants:CDY29938	EnsemblPlantsGene:GSBRNA2T00044438001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF01344
ProteinID:CDY29938	ProteinID:CDY29938.1	SUPFAM:SSF117281	UniParc:UPI0004EDF358	UniProt:A0A078GZA5	MapMan:35.1

Description

BnaC05g28980DBnaC05g28980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZA5]

Coordinates

chrLK032246:-:424785..425989

Molecular Weight (calculated)

39765.4 Da

IEP (calculated)

8.802

GRAVY (calculated)

-0.062

Length

343 amino acids

Sequence
(BLAST)

001: MSTSLTNLST ATDSNESSPL LATATSFKES LPLNQTYLPD DLLLNFFVRV SVLYYPILSI VSKRFRCLLA SLALYQTRKL LNRTESCIYV CLQYGTEESR
101: WFTLCRRPTQ VPRFPNPKPQ WFITTSNFSP CGNFLWNLST VGSNIYLIGG YIGYKPTSRV FCMDCRSHIW QEAPSMLIAR TVPRRYAVNI YLKEEPSKET
201: FIFLETGTCM VYKPKENRWA AVGWEINYIG TAICVIDNVM YCYRRNKVIE WYDDKENCWK ILKGLEELPK LPSGVTLVNY GGRIAVSWDT RTCFKMMIWC
301: AEITLEKRLN EHEIYGKVEW CDVVLTVPRS LRLHKKLIVV ISV

Best Arabidopsis Sequence Match ( AT4G11750.1 )
(BLAST)

001: MMNPPVDLPY IPDDLLLNCL ARVSRLYYPI LSLVSKRFRS LVASLELYEI RKLLGHREKC LYLNLRFSSE SEPRWFTLCR RPTRSPNPNF NSGWFASCFI
101: PHTMKKEKKS SDNNLMVPVP TSNFITPPSE LTRITNGSNI YIVRVFTNGA FSSRFLFMDC RSHTLHEVPR MDKTKKKPFM IRVLDGKIYV IEGCKNPDYS
201: NLIERFDLKT QTWEHVPSPS AEIRGSYITG SLVYDGKLYL FGDKRVVYKP KENKWDVVGL EMPLRWTPSY ISCVVDNVIY SYGRSRVLMW YNTEERLWRY
301: LKGLKKLPKL PKDCTCVRLL GYSGKVVVLW EKNVGGGDPQ KKMIWCAEIA LERRSANKIY GKIEWCDVVL TLPRSCSLLN FAAVTV

Arabidopsis Description

Putative F-box/kelch-repeat protein At4g11750 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0E2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.