CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011855.1-P	Field mustard	plastid	62.66	96.39
CDY42632	Canola	cytosol	90.34	90.34
CDY42634	Canola	cytosol, nucleus, plastid	65.01	59.71
CDY41986	Canola	cytosol	63.71	59.22
CDX86750	Canola	cytosol	14.88	50.44
CDY12136	Canola	cytosol	10.44	48.19
CDX84184	Canola	cytosol, nucleus, vacuole	13.32	48.11
AT4G39590.1	Thale cress	plastid	48.83	46.52
CDX72687	Canola	cytosol	39.43	45.07
CDY41985	Canola	plastid	30.03	43.23
CDY53174	Canola	cytosol	36.29	43.03
CDY63148	Canola	cytosol	37.08	42.9
CDY41983	Canola	cytosol	28.46	42.75
CDY01110	Canola	cytosol	38.9	42.21
CDY42633	Canola	plastid	29.77	41.45
CDY09006	Canola	nucleus	32.38	40.66
CDY68916	Canola	nucleus	32.11	40.2
CDX99633	Canola	mitochondrion	40.21	39.29
CDY15927	Canola	cytosol	39.95	39.23
CDX75197	Canola	cytosol	37.86	39.19
CDY16374	Canola	cytosol, nucleus, peroxisome	34.2	38.76
CDY53173	Canola	nucleus, plastid	37.08	38.27
CDX91543	Canola	plastid	34.2	38.19
CDY00653	Canola	cytosol	32.38	37.46
CDY35547	Canola	cytosol	24.54	37.3
CDY42631	Canola	nucleus	27.15	36.24
CDY16283	Canola	cytosol	13.58	35.62
CDY29938	Canola	cytosol, peroxisome, plasma membrane	31.85	35.57
CDY51548	Canola	plastid	31.33	35.4
CDY19889	Canola	cytosol	32.11	35.14
CDY02008	Canola	cytosol	33.68	34.96
CDX78384	Canola	cytosol	13.05	34.72
CDX72460	Canola	extracellular	35.51	34.34
CDY29974	Canola	plasma membrane	29.5	34.24
CDY57171	Canola	cytosol	29.24	34.15
CDY13275	Canola	mitochondrion	18.28	33.65
CDY49284	Canola	extracellular, plasma membrane, vacuole	32.38	33.6
CDX98384	Canola	plastid	27.68	33.54
CDY07711	Canola	extracellular	28.72	31.25
CDY44215	Canola	plasma membrane	22.19	29.72
CDY27975	Canola	nucleus, plastid	25.33	29.22
CDY36006	Canola	cytosol	16.71	28.96
CDY66883	Canola	extracellular	15.67	28.57
CDY51549	Canola	plastid	13.32	28.18
CDY62432	Canola	golgi	31.07	27.23
CDY13276	Canola	cytosol	22.19	23.22
CDY41987	Canola	plastid	38.38	20.56
CDY49285	Canola	golgi, plasma membrane	31.33	20.51
CDY42635	Canola	nucleus	38.38	19.65
CDX81183	Canola	cytosol	11.23	18.14

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078HX86	EnsemblPlants:CDY41984	ProteinID:CDY41984	ProteinID:CDY41984.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00073980001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0004EEED7A	:	:	:	:

Description

BnaA01g05560DBnaA01g05560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HX86]

Coordinates

chrLK032511:-:185490..186777

Molecular Weight (calculated)

43552.1 Da

IEP (calculated)

7.929

GRAVY (calculated)

-0.254

Length

383 amino acids

Sequence
(BLAST)

001: MSSTAESSAA VNGDKPPHKK MTTQSPEISI LSLPYDLLLN CLARVSRLYY PTLSLVSKKF RSVVASPDLY EARSLLHRTE SCLYLCLRYD RDYPRNLDTY
101: WFVLCRKPNR TVTDRSSGHL FIPVPSPQLR PARSMSLVAV GSNIYRIGGD MPSSSRVWVL DCRFNTWHRA PRMRLKRSSP AASLIDGKIY VAGGCEDPSS
201: VNWIEVFDPK TRTWGNVANP GTETRPRAEV RSFGIGGKLY IRGDEYVVYD PKEASWNPIG LGIDMAFAAS FNHCVIGDVM FLWDDDREFR WYDSKASSWK
301: KLNGVEDLPN FYGYCKMVDH GGKKMALLWE GYLRSEFVVW CAEIALEMRD GDEMWGIVEW LDVVLSLNEP FRLFDANVLS ATV

Best Arabidopsis Sequence Match ( AT4G39590.1 )
(BLAST)

001: MFPMSSTSRS SAANNRKDPP RKKNKETPSP VTREPTSIDS LPNDLLLNCF ARVSRMYYPA LSRVSKRFRS IVTSPEIYNT RSLLNRTEKC LYLCLRFPFD
101: NNTHWFTLYQ NPNRTVSDKV FLQIPSPQYP LTLSSNLVAV GSNIYRIGGT VGDDSCPLGF DREPSSKVSI LDCRSHTWRD GPRMRLNRRS STTSVVDGKI
201: YVTGGTEDTD NPSHWIEVFD PKTQSWGTVT NPHIVKVWEE VCYRRAVKSI GHDGKLYLSG DKYVVYDPDE GKWNSVEEHW LIGYAIGSSN CVVDNILFYW
301: DQGVFKWYDS KVSSWKQLKG LEGLPDDFSQ REYCKLVDLG GKMAVLWDKW EYSGVCMIFC AEISLEKRDG DEIWGKVEWF DTVLEVGASC SLKSADALSA
401: SV

Arabidopsis Description

F-box/kelch-repeat protein At4g39590 [Source:UniProtKB/Swiss-Prot;Acc:Q1PE10]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.