Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68916 | Canola | nucleus | 88.52 | 88.24 |
| Bra023735.1-P | Field mustard | nucleus | 87.87 | 71.66 |
| CDY41983 | Canola | cytosol | 39.34 | 47.06 |
| CDX86750 | Canola | cytosol | 16.72 | 45.13 |
| CDY42633 | Canola | plastid | 40.33 | 44.73 |
| CDY41985 | Canola | plastid | 38.69 | 44.36 |
| CDY12136 | Canola | cytosol | 11.8 | 43.37 |
| CDY00653 | Canola | cytosol | 46.56 | 42.9 |
| AT5G38680.1 | Thale cress | cytosol | 49.84 | 42.58 |
| CDY53173 | Canola | nucleus, plastid | 48.85 | 40.16 |
| AT4G25710.1 | Thale cress | cytosol | 51.15 | 40.0 |
| CDY63148 | Canola | cytosol | 42.3 | 38.97 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 13.44 | 38.68 |
| CDY01110 | Canola | cytosol | 42.95 | 37.11 |
| CDY07711 | Canola | extracellular | 42.3 | 36.65 |
| CDX78384 | Canola | cytosol | 17.05 | 36.11 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 40.0 | 36.09 |
| CDY16283 | Canola | cytosol | 17.05 | 35.62 |
| CDY15927 | Canola | cytosol | 45.25 | 35.38 |
| CDX91543 | Canola | plastid | 39.34 | 34.99 |
| CDX99633 | Canola | mitochondrion | 44.92 | 34.95 |
| CDY29974 | Canola | plasma membrane | 37.7 | 34.85 |
| CDY53174 | Canola | cytosol | 35.74 | 33.75 |
| CDY41984 | Canola | cytosol | 40.66 | 32.38 |
| CDY42631 | Canola | nucleus | 30.16 | 32.06 |
| CDY62432 | Canola | golgi | 45.9 | 32.04 |
| CDX72687 | Canola | cytosol | 34.75 | 31.64 |
| CDY02008 | Canola | cytosol | 37.7 | 31.17 |
| CDY57171 | Canola | cytosol | 33.44 | 31.1 |
| CDY51548 | Canola | plastid | 34.43 | 30.97 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 34.43 | 30.61 |
| CDY27975 | Canola | nucleus, plastid | 33.11 | 30.42 |
| CDX72460 | Canola | extracellular | 39.34 | 30.3 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 36.39 | 30.08 |
| CDY42632 | Canola | cytosol | 37.7 | 30.03 |
| CDY66883 | Canola | extracellular | 20.66 | 30.0 |
| CDX75197 | Canola | cytosol | 36.39 | 30.0 |
| CDY35547 | Canola | cytosol | 24.59 | 29.76 |
| CDY19889 | Canola | cytosol | 34.1 | 29.71 |
| CDY36006 | Canola | cytosol | 21.31 | 29.41 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 39.67 | 29.02 |
| CDY41986 | Canola | cytosol | 38.69 | 28.64 |
| CDY51549 | Canola | plastid | 16.72 | 28.18 |
| CDY44215 | Canola | plasma membrane | 21.97 | 23.43 |
| CDY13275 | Canola | mitochondrion | 15.41 | 22.6 |
| CDX98384 | Canola | plastid | 21.97 | 21.2 |
| CDX81183 | Canola | cytosol | 15.74 | 20.25 |
| CDY49285 | Canola | golgi, plasma membrane | 34.1 | 17.78 |
| CDY13276 | Canola | cytosol | 20.98 | 17.49 |
| CDY41987 | Canola | plastid | 35.74 | 15.24 |
| CDY42635 | Canola | nucleus | 35.08 | 14.3 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | UniProt:A0A078F6G8 | EnsemblPlants:CDY09006 | ProteinID:CDY09006 | ProteinID:CDY09006.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00001115001 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | PFAM:PF00646 | PFscan:PS50181 | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF23 | SMART:SM00256 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EEBE93 | SEG:seg |
Description
BnaC01g30850DBnaC01g30850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6G8]
Coordinates
chrLK031991:-:504194..505351
Molecular Weight (calculated)
34006.8 Da
IEP (calculated)
8.328
GRAVY (calculated)
-0.144
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSPEKKKK KLAEELPSTR QTNPTPSLPD ELLTSCIARL SRLYYPTLSL VSKSFRSLLS SPELYKARSL SSRTETCIYL CLESSSDSRW FTLCRKPDKT
101: VTKDDKKSTS YVLSKLPALH SPPAVFSGLV SVGSDIYNIR SSSNVSVLDC RFHTWRKAPS LPVELMALSA CAVDEKIYPH VATDDGVVCY NSQEGKWELG
201: EAKMGSFRFS DSYCEVENVL YSVCNGTLRW YDGEVNVWRS LEGLVGLPKF LPGVSVRFGQ KKILCAEIAL ERRGVCEIWG GVEWIDHVLT VPIGYYIVKA
301: LSATV
101: VTKDDKKSTS YVLSKLPALH SPPAVFSGLV SVGSDIYNIR SSSNVSVLDC RFHTWRKAPS LPVELMALSA CAVDEKIYPH VATDDGVVCY NSQEGKWELG
201: EAKMGSFRFS DSYCEVENVL YSVCNGTLRW YDGEVNVWRS LEGLVGLPKF LPGVSVRFGQ KKILCAEIAL ERRGVCEIWG GVEWIDHVLT VPIGYYIVKA
301: LSATV
001: MSYPERKRKR SRWSKPHSTQ NPSPSLPDDV LLSIFARVSR LYYPTLSHVS ESFRSLLASP ELYKARSLSG NTEICLYVCL RCSTGYRWFS LSRKPDQTLT
101: YEERKSSGYA LARVPIPGGS PNVRSSSLVA VGSDIYNICG SINKASSSSS VSILDCQSHT WREAPSLPVE LSSISASVRD GNQGGHGYSD SRKNSFKVFA
201: YNSKEGRWDH LVGLGAGSFM LPDSYCVIDN VSYSVSDGMF RWYDTEVRRW KDLRGLFQLP KFSAGACVIL ADYGGKMAVL WDQLPYHHGF HKTIQCAVIA
301: LERRTSFVFR EKSCQIWGKV EWVDDLLTVP TSYDLVKVLV ATL
101: YEERKSSGYA LARVPIPGGS PNVRSSSLVA VGSDIYNICG SINKASSSSS VSILDCQSHT WREAPSLPVE LSSISASVRD GNQGGHGYSD SRKNSFKVFA
201: YNSKEGRWDH LVGLGAGSFM LPDSYCVIDN VSYSVSDGMF RWYDTEVRRW KDLRGLFQLP KFSAGACVIL ADYGGKMAVL WDQLPYHHGF HKTIQCAVIA
301: LERRTSFVFR EKSCQIWGKV EWVDDLLTVP TSYDLVKVLV ATL
Arabidopsis Description
F-box/kelch-repeat protein At3g08810 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9X9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.