Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033852.1-P | Field mustard | cytosol, plasma membrane, plastid | 87.7 | 80.36 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 62.7 | 46.06 |
| CDY12136 | Canola | cytosol | 14.68 | 44.58 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 15.08 | 35.85 |
| CDX86750 | Canola | cytosol | 15.08 | 33.63 |
| CDX72687 | Canola | cytosol | 41.27 | 31.04 |
| CDY63148 | Canola | cytosol | 35.71 | 27.19 |
| CDY19889 | Canola | cytosol | 37.7 | 27.14 |
| CDX75197 | Canola | cytosol | 39.29 | 26.76 |
| CDY00653 | Canola | cytosol | 34.52 | 26.28 |
| CDY01110 | Canola | cytosol | 35.71 | 25.5 |
| CDY53173 | Canola | nucleus, plastid | 36.51 | 24.8 |
| CDY09006 | Canola | nucleus | 29.76 | 24.59 |
| CDY41984 | Canola | cytosol | 37.3 | 24.54 |
| CDY68916 | Canola | nucleus | 29.76 | 24.51 |
| CDY41983 | Canola | cytosol | 24.6 | 24.31 |
| CDY53174 | Canola | cytosol | 30.95 | 24.15 |
| CDY42632 | Canola | cytosol | 36.51 | 24.02 |
| CDX72460 | Canola | extracellular | 36.51 | 23.23 |
| CDY02008 | Canola | cytosol | 32.54 | 22.22 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 32.54 | 22.22 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 29.76 | 22.19 |
| CDX99633 | Canola | mitochondrion | 34.13 | 21.94 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 35.71 | 21.58 |
| CDY15927 | Canola | cytosol | 33.33 | 21.54 |
| CDY41986 | Canola | cytosol | 34.92 | 21.36 |
| CDX91543 | Canola | plastid | 28.97 | 21.28 |
| CDY42633 | Canola | plastid | 23.02 | 21.09 |
| CDY41985 | Canola | plastid | 22.22 | 21.05 |
| CDY57171 | Canola | cytosol | 27.38 | 21.04 |
| CDY07711 | Canola | extracellular | 28.57 | 20.45 |
| CDX98384 | Canola | plastid | 25.4 | 20.25 |
| CDY42631 | Canola | nucleus | 23.02 | 20.21 |
| CDY44215 | Canola | plasma membrane | 22.22 | 19.58 |
| CDY51548 | Canola | plastid | 26.19 | 19.47 |
| CDY62432 | Canola | golgi | 31.35 | 18.08 |
| CDY29974 | Canola | plasma membrane | 22.62 | 17.27 |
| CDY27975 | Canola | nucleus, plastid | 20.63 | 15.66 |
| CDY13275 | Canola | mitochondrion | 12.7 | 15.38 |
| CDY49285 | Canola | golgi, plasma membrane | 32.14 | 13.85 |
| CDY13276 | Canola | cytosol | 19.44 | 13.39 |
| CDY66883 | Canola | extracellular | 10.32 | 12.38 |
| CDY41987 | Canola | plastid | 29.37 | 10.35 |
| CDY36006 | Canola | cytosol | 8.73 | 9.95 |
| CDY51549 | Canola | plastid | 7.14 | 9.94 |
| CDY42635 | Canola | nucleus | 28.57 | 9.63 |
| CDY16283 | Canola | cytosol | 3.97 | 6.85 |
| CDX78384 | Canola | cytosol | 2.78 | 4.86 |
| CDX81183 | Canola | cytosol | 3.17 | 3.38 |
Protein Annotations
| EnsemblPlants:CDY35547 | EnsemblPlantsGene:GSBRNA2T00058608001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | PFAM:PF01344 |
| ProteinID:CDY35547 | ProteinID:CDY35547.1 | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI0004EEBBCA | UniProt:A0A078HCP0 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA05g16390DBnaA05g16390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCP0]
Coordinates
chrLK032354:-:198460..204364
Molecular Weight (calculated)
28928.8 Da
IEP (calculated)
8.549
GRAVY (calculated)
-0.162
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSLTNLST ATDSNESSPL LATARSFKEW LPLNQTYLHD DLLLNFFVRV SVLYYPILSL VSKRFRCLLA SRALYEIRKL LNRTESCIYV CLQYGIEESC
101: WFTLCRRPTR SKSGDNLLIS VTTSNFSPCG NFLWNLSTVG SNIYMIGGYI GYKPTSRVFC MDCRSHIWQE APSMLIARTV PRVSVLDGKI YVLESFKKFD
201: SSNLMEIFDP KTQTWEHVPT PGAEIHGEYM NSTGNHQRKP LFFWRQEHGV QA
101: WFTLCRRPTR SKSGDNLLIS VTTSNFSPCG NFLWNLSTVG SNIYMIGGYI GYKPTSRVFC MDCRSHIWQE APSMLIARTV PRVSVLDGKI YVLESFKKFD
201: SSNLMEIFDP KTQTWEHVPT PGAEIHGEYM NSTGNHQRKP LFFWRQEHGV QA
001: MMNPPVDLPY IPDDLLLNCL ARVSRLYYPI LSLVSKRFRS LVASLELYEI RKLLGHREKC LYLNLRFSSE SEPRWFTLCR RPTRSPNPNF NSGWFASCFI
101: PHTMKKEKKS SDNNLMVPVP TSNFITPPSE LTRITNGSNI YIVRVFTNGA FSSRFLFMDC RSHTLHEVPR MDKTKKKPFM IRVLDGKIYV IEGCKNPDYS
201: NLIERFDLKT QTWEHVPSPS AEIRGSYITG SLVYDGKLYL FGDKRVVYKP KENKWDVVGL EMPLRWTPSY ISCVVDNVIY SYGRSRVLMW YNTEERLWRY
301: LKGLKKLPKL PKDCTCVRLL GYSGKVVVLW EKNVGGGDPQ KKMIWCAEIA LERRSANKIY GKIEWCDVVL TLPRSCSLLN FAAVTV
101: PHTMKKEKKS SDNNLMVPVP TSNFITPPSE LTRITNGSNI YIVRVFTNGA FSSRFLFMDC RSHTLHEVPR MDKTKKKPFM IRVLDGKIYV IEGCKNPDYS
201: NLIERFDLKT QTWEHVPSPS AEIRGSYITG SLVYDGKLYL FGDKRVVYKP KENKWDVVGL EMPLRWTPSY ISCVVDNVIY SYGRSRVLMW YNTEERLWRY
301: LKGLKKLPKL PKDCTCVRLL GYSGKVVVLW EKNVGGGDPQ KKMIWCAEIA LERRSANKIY GKIEWCDVVL TLPRSCSLLN FAAVTV
Arabidopsis Description
Putative F-box/kelch-repeat protein At4g11750 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0E2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.