CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49284	Canola	extracellular, plasma membrane, vacuole	65.4	70.19
CDX84184	Canola	cytosol, nucleus, vacuole	13.89	51.89
CDY49285	Canola	golgi, plasma membrane	76.52	51.79
CDX86750	Canola	cytosol	12.88	45.13
CDY53174	Canola	cytosol	35.61	43.65
CDY12136	Canola	cytosol	9.09	43.37
CDX72687	Canola	cytosol	36.62	43.28
CDY63148	Canola	cytosol	35.61	42.6
CDY41985	Canola	plastid	28.54	42.48
CDX75197	Canola	cytosol	39.39	42.16
CDY01110	Canola	cytosol	36.62	41.08
CDY42633	Canola	plastid	28.03	40.36
CDY68916	Canola	nucleus	31.06	40.2
CDY16374	Canola	cytosol, nucleus, peroxisome	33.84	39.65
CDY41983	Canola	cytosol	25.51	39.61
CDY53173	Canola	nucleus, plastid	36.87	39.35
CDY09006	Canola	nucleus	30.3	39.34
CDX91543	Canola	plastid	33.84	39.07
CDY02008	Canola	cytosol	35.35	37.94
CDY00653	Canola	cytosol	31.57	37.76
CDY57171	Canola	cytosol	31.06	37.5
CDY19889	Canola	cytosol	32.58	36.86
CDY35547	Canola	cytosol	23.23	36.51
CDY16283	Canola	cytosol	13.38	36.3
CDX78384	Canola	cytosol	13.13	36.11
CDY51548	Canola	plastid	30.56	35.69
CDY42631	Canola	nucleus	25.76	35.54
CDY41984	Canola	cytosol	34.34	35.51
CDY13275	Canola	mitochondrion	18.43	35.1
CDY42632	Canola	cytosol	33.33	34.46
CDY15927	Canola	cytosol	33.84	34.36
CDX99633	Canola	mitochondrion	33.84	34.18
CDY29974	Canola	plasma membrane	28.28	33.94
CDY07711	Canola	extracellular	29.8	33.52
CDY29938	Canola	cytosol, peroxisome, plasma membrane	28.79	33.24
CDY42634	Canola	cytosol, nucleus, plastid	34.6	32.85
CDY41986	Canola	cytosol	33.59	32.28
CDX98384	Canola	plastid	24.75	31.01
CDY66883	Canola	extracellular	15.91	30.0
CDY44215	Canola	plasma membrane	20.71	28.67
CDY27975	Canola	nucleus, plastid	23.74	28.31
CDY36006	Canola	cytosol	15.66	28.05
CDY62432	Canola	golgi	30.56	27.69
CDY51549	Canola	plastid	12.37	27.07
CDY13276	Canola	cytosol	19.95	21.58
CDX81183	Canola	cytosol	12.37	20.68
CDY41987	Canola	plastid	30.3	16.78
CDY42635	Canola	nucleus	30.81	16.31

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlants:CDX72460	ProteinID:CDX72460	ProteinID:CDX72460.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00099973001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EC24B3
SEG:seg	:	:	:	:	:

Description

BnaC07g44820D

Coordinates

chrLK031796:+:1346469..1347659

Molecular Weight (calculated)

45497.9 Da

IEP (calculated)

6.420

GRAVY (calculated)

-0.275

Length

396 amino acids

Sequence
(BLAST)

001: MSSTTMSTDP MKVEVPPVLT LLMLPNELIL SCLARVPRLY YPTLTLVSKS FRSLINSPEL CKTRSLLART ESCLYVWFQF QNDENTHWFT LYRNPYQTVD
101: DNSQTNKLGG YKLVPIPSLD SPPSAMSVVA AVGSDIYAIG GSIDGVSSSG VFVMDSHYHT WCKAPSMHVA RVSPSASVLD GKIYVVGGSK NLDYTNWMEV
201: YDTKTQTWEF VPSPGEDIDG RFGYKSASLE GSVYVMDRAK YETFKLNKGR WRVADQKLTT GWRWDSGQFY YCVTENVLYY YSSIDLCWYD FIDRLWRGVK
301: GLEGRLPWYR RFRNTYHHRL ADYGGKLVFL WKEDVHTENV QNTTLVWCAE ISLERLHRSE IYGTVEWCDV VFTYTTQVDQ ENTTQVELMH VIATTA

Best Arabidopsis Sequence Match ( AT4G39550.1 )
(BLAST)

001: MSSPEKKRKT TKKPSPTPQS TTPNPSLPDD LVVSCLARVS RLYYPTLSLV SKSFRSLIAS PDLYKTRSLL GRTESCLYVC LQEKDSDPNP RWFTLCLKPN
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV

Arabidopsis Description

F-box/kelch-repeat protein At4g39550 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVA3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.