Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13275 | Canola | mitochondrion | 37.03 | 56.25 |
| AT4G11745.1 | Thale cress | cytosol | 42.09 | 46.83 |
| AT4G11770.1 | Thale cress | cytosol | 48.1 | 38.38 |
| CDY42631 | Canola | nucleus | 30.06 | 33.1 |
| CDY13276 | Canola | cytosol | 36.71 | 31.69 |
| CDY41985 | Canola | plastid | 25.95 | 30.83 |
| CDY42633 | Canola | plastid | 25.63 | 29.45 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 31.96 | 29.45 |
| CDY44215 | Canola | plasma membrane | 26.58 | 29.37 |
| CDY19889 | Canola | cytosol | 31.65 | 28.57 |
| CDX78384 | Canola | cytosol | 12.97 | 28.47 |
| CDY63148 | Canola | cytosol | 29.43 | 28.1 |
| CDY16283 | Canola | cytosol | 12.97 | 28.08 |
| CDY53173 | Canola | nucleus, plastid | 32.91 | 28.03 |
| CDY41984 | Canola | cytosol | 33.54 | 27.68 |
| CDY01110 | Canola | cytosol | 30.38 | 27.2 |
| CDY42632 | Canola | cytosol | 32.91 | 27.15 |
| CDY36006 | Canola | cytosol | 18.99 | 27.15 |
| CDY53174 | Canola | cytosol | 27.53 | 26.93 |
| CDY41983 | Canola | cytosol | 21.52 | 26.67 |
| CDX75197 | Canola | cytosol | 31.01 | 26.49 |
| CDY51549 | Canola | plastid | 14.87 | 25.97 |
| CDX72687 | Canola | cytosol | 27.22 | 25.67 |
| CDY35547 | Canola | cytosol | 20.25 | 25.4 |
| CDY41986 | Canola | cytosol | 32.59 | 25.0 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 26.58 | 24.85 |
| CDX72460 | Canola | extracellular | 31.01 | 24.75 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 32.59 | 24.7 |
| CDY02008 | Canola | cytosol | 28.8 | 24.66 |
| CDX91543 | Canola | plastid | 26.58 | 24.49 |
| CDY66883 | Canola | extracellular | 16.14 | 24.29 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 28.16 | 24.12 |
| CDX86750 | Canola | cytosol | 8.54 | 23.89 |
| CDY15927 | Canola | cytosol | 28.8 | 23.33 |
| CDX99633 | Canola | mitochondrion | 28.8 | 23.21 |
| CDY57171 | Canola | cytosol | 24.05 | 23.17 |
| CDY00653 | Canola | cytosol | 24.05 | 22.96 |
| CDY68916 | Canola | nucleus | 21.52 | 22.22 |
| CDY09006 | Canola | nucleus | 21.2 | 21.97 |
| CDY51548 | Canola | plastid | 23.42 | 21.83 |
| CDY29974 | Canola | plasma membrane | 22.15 | 21.21 |
| CDY07711 | Canola | extracellular | 23.42 | 21.02 |
| CDY27975 | Canola | nucleus, plastid | 20.57 | 19.58 |
| CDY62432 | Canola | golgi | 23.1 | 16.7 |
| CDY49285 | Canola | golgi, plasma membrane | 29.43 | 15.9 |
| CDX81183 | Canola | cytosol | 11.08 | 14.77 |
| CDY41987 | Canola | plastid | 27.22 | 12.03 |
| CDY42635 | Canola | nucleus | 26.9 | 11.36 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 2.85 | 8.49 |
| CDY12136 | Canola | cytosol | 0.32 | 1.2 |
Protein Annotations
| EnsemblPlants:CDX98384 | EnsemblPlantsGene:GSBRNA2T00105963001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | PFAM:PF01344 |
| ProteinID:CDX98384 | ProteinID:CDX98384.1 | SEG:seg | SUPFAM:SSF117281 | UniParc:UPI0004EE2EF8 | MapMan:35.1 |
Description
BnaC06g17450D
Coordinates
chrLK031904:-:1001273..1002223
Molecular Weight (calculated)
36689.7 Da
IEP (calculated)
9.478
GRAVY (calculated)
-0.257
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVHSMQKTN SKPLPNPKPK PKPNHISGWF SPCFRPYRIP KSSNYHMVSV STRKFSHWTW WTCAAIGSTI YTVGKYIYGG ISSRVFFLDC RSHTWHEAPS
101: IQMTPKYPLM SVIDGKIYVV EGLNVPDSSD SMKVFDLKKQ IWEHLPCPRA EIFGKSYILR SLAIDGKLYL FGDKNMVYKV DENKWDVVGL ETRISWAFSD
201: FSCVIDNIMY NYILSRKLQW YDSKGILWRD LKGLEELPKM PKSCTRVRMV NHGGKIALLW DKKVRGFDSN EKNIWCAVFA VERRSEQEVY GKLEWCEVVL
301: KVPKSCCLLE FLAVDV
101: IQMTPKYPLM SVIDGKIYVV EGLNVPDSSD SMKVFDLKKQ IWEHLPCPRA EIFGKSYILR SLAIDGKLYL FGDKNMVYKV DENKWDVVGL ETRISWAFSD
201: FSCVIDNIMY NYILSRKLQW YDSKGILWRD LKGLEELPKM PKSCTRVRMV NHGGKIALLW DKKVRGFDSN EKNIWCAVFA VERRSEQEVY GKLEWCEVVL
301: KVPKSCCLLE FLAVDV
001: MMNGIKSSPC NMPYLPDDLL LNILGRVSRL YYPILSLVSK RFRSLVGSLE LYKIRTLLGR RTENCLYLSL RFSYGSNPRW FTLCRRPTRT PSPEPNLKSR
101: WFTSCFRPIL TNLTRATSKE EKKLSENLMV SIPTSNDCPL SGLTCNTIGS YIYMIGGYIN GVLSSRVFFL DCRSHTWHEA PSMQVARKSP LVNVLDGKIY
201: VVEGWRGSDY SNLIEIFDPK TQKWEHVPSP SAEMRGRYIS KGLVYEEKLY LFGDKNVVYK PKESRWDALG FDMNLWLVSY GSSCVIDNVC YMVFYKRLIW
301: YDSEVRYWRV LKGLEKLPKL RHRRSCIRMV DYGGKIAILW EKKVRVVGSD KKMIWCTEIA LERRSAHKIY GKIEWCDVVL TVPKSCSLLE FIAVTI
101: WFTSCFRPIL TNLTRATSKE EKKLSENLMV SIPTSNDCPL SGLTCNTIGS YIYMIGGYIN GVLSSRVFFL DCRSHTWHEA PSMQVARKSP LVNVLDGKIY
201: VVEGWRGSDY SNLIEIFDPK TQKWEHVPSP SAEMRGRYIS KGLVYEEKLY LFGDKNVVYK PKESRWDALG FDMNLWLVSY GSSCVIDNVC YMVFYKRLIW
301: YDSEVRYWRV LKGLEKLPKL RHRRSCIRMV DYGGKIAILW EKKVRVVGSD KKMIWCTEIA LERRSAHKIY GKIEWCDVVL TVPKSCSLLE FIAVTI
Arabidopsis Description
Putative F-box/kelch-repeat protein At4g11770 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0E4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.