CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01110	Canola	cytosol	94.56	88.67
CDX86750	Canola	cytosol	16.31	47.79
CDY41983	Canola	cytosol	35.65	46.27
CDY41985	Canola	plastid	37.16	46.24
CDY42633	Canola	plastid	38.07	45.82
CDX84184	Canola	cytosol, nucleus, vacuole	14.5	45.28
CDY68916	Canola	nucleus	40.18	43.46
CDY12136	Canola	cytosol	10.88	43.37
CDY09006	Canola	nucleus	38.97	42.3
CDY53174	Canola	cytosol	39.88	40.87
CDY53173	Canola	nucleus, plastid	44.41	39.62
CDX72687	Canola	cytosol	39.27	38.81
CDY42632	Canola	cytosol	43.2	37.34
CDY41984	Canola	cytosol	42.9	37.08
CDY42631	Canola	nucleus	31.72	36.59
CDX75197	Canola	cytosol	40.18	35.95
CDY42634	Canola	cytosol, nucleus, plastid	45.02	35.73
CDY35547	Canola	cytosol	27.19	35.71
CDY57171	Canola	cytosol	35.35	35.67
CDX72460	Canola	extracellular	42.6	35.61
CDX99633	Canola	mitochondrion	41.99	35.46
CDY15927	Canola	cytosol	41.69	35.38
CDY00653	Canola	cytosol	35.35	35.35
CDY41986	Canola	cytosol	42.9	34.47
CDY49284	Canola	extracellular, plasma membrane, vacuole	38.37	34.42
CDY02008	Canola	cytosol	38.37	34.42
CDY16374	Canola	cytosol, nucleus, peroxisome	34.44	33.73
CDY29938	Canola	cytosol, peroxisome, plasma membrane	34.14	32.94
CDX91543	Canola	plastid	34.14	32.94
CDY29974	Canola	plasma membrane	32.63	32.73
CDY51548	Canola	plastid	32.93	32.15
CDY07711	Canola	extracellular	34.14	32.1
CDY19889	Canola	cytosol	32.93	31.14
CDX98384	Canola	plastid	28.1	29.43
CDY51549	Canola	plastid	15.71	28.73
CDY62432	Canola	golgi	35.95	27.23
CDY27975	Canola	nucleus, plastid	27.19	27.11
CDY13275	Canola	mitochondrion	16.92	26.92
CDY36006	Canola	cytosol	17.82	26.7
CDX78384	Canola	cytosol	11.48	26.39
CDY16283	Canola	cytosol	11.48	26.03
CDY66883	Canola	extracellular	16.31	25.71
CDY44215	Canola	plasma membrane	21.45	24.83
CDY49285	Canola	golgi, plasma membrane	35.05	19.83
CDY13276	Canola	cytosol	21.15	19.13
CDX81183	Canola	cytosol	12.39	17.3
CDY41987	Canola	plastid	34.74	16.08
CDY42635	Canola	nucleus	33.53	14.84

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078JDS6	EnsemblPlants:CDY63148	ProteinID:CDY63148	ProteinID:CDY63148.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00037959001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0004EDD59C	:	:	:	:

Description

BnaCnng41470DBnaCnng41470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDS6]

Coordinates

chrLK034251:-:2793..3854

Molecular Weight (calculated)

37211.3 Da

IEP (calculated)

8.734

GRAVY (calculated)

-0.251

Length

331 amino acids

Sequence
(BLAST)

001: MSSHKKKRNK KLLNPSPLFP LSTANLSLPH DLLLNCIGRL SRLYYPTLSL VCKSYRSLIA SPELYKTRSL LNRTESCLYV CLQLSPDSNP RWFTLSRRPN
101: RTLARNKKLS DYLLVPVTSP HVTSVRSSSV AVGSDIYEIG GLINGVPSSS VSVLDCRSNS WHQAPNMQVG RSFPSANVID GKILVKGGLE LKDVNSSKWV
201: EVFDPNTQNW TTVSFTCGSR EWQSDDDNGM ARHSSSFCLI DDVSYCFDNR KLKWFDDKVG YWRFATGLEG MVVLWDRHDR SSNCQGRTIW CAVIALERCS
301: SEEISGTVEW SEAVLKVPNS FEFVHVLAAT V

Best Arabidopsis Sequence Match ( AT5G49000.2 )
(BLAST)

001: MSSPERKRKK RSLEPSPEST PNPSLPDDLI VSILARVSRL YYPILSLVSK SSRTLVTSPE LYKTRSFFNR TESCLYVCLD FPPDPNPRWF TLYRKPNQNI
101: TEKTKNSSGF VLAPIPNHHS HSSSIVAIGS NIYAIGGSIE NAPSSKVSIL DCRSHTWHEA PSMRMKRNYP AANVVDGKIY VAGGLEEFDS SKWMEVFDIK
201: TQTWEFVLSP LAERFIYRSL VIEGEIYIFG DKVVTYKPKE DRWGGVGEHQ SMDLGLFFHS YCVIDNVLYC YRPGGIKWYE SEKRSWRKLR GLKGLSKLAS
301: SCVKLADYGG KMALLWDKYI PCSGNKSHSI SCAVVSLERC KNQGIRGKVE WFDDMLTVPS SYNFVGALAA TL

Arabidopsis Description

F-box/kelch-repeat protein At5g49000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI70]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.