Subcellular Localization
min:
: max
Winner_takes_all: vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12136 | Canola | cytosol | 39.62 | 50.6 |
| CDX86750 | Canola | cytosol | 40.57 | 38.05 |
| CDY41983 | Canola | cytosol | 49.06 | 20.39 |
| AT4G34170.1 | Thale cress | cytosol | 51.89 | 18.77 |
| CDY41985 | Canola | plastid | 42.45 | 16.92 |
| AT4G33900.1 | Thale cress | cytosol | 57.55 | 16.09 |
| CDY42633 | Canola | plastid | 41.51 | 16.0 |
| AT4G23580.1 | Thale cress | cytosol | 56.6 | 15.67 |
| CDY35547 | Canola | cytosol | 35.85 | 15.08 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 47.17 | 14.79 |
| CDX75197 | Canola | cytosol | 50.94 | 14.59 |
| CDY19889 | Canola | cytosol | 48.11 | 14.57 |
| CDY63148 | Canola | cytosol | 45.28 | 14.5 |
| CDY51548 | Canola | plastid | 46.23 | 14.45 |
| CDY57171 | Canola | cytosol | 44.34 | 14.33 |
| CDX91543 | Canola | plastid | 46.23 | 14.29 |
| CDY01110 | Canola | cytosol | 47.17 | 14.16 |
| CDY68916 | Canola | nucleus | 40.57 | 14.05 |
| CDY53174 | Canola | cytosol | 42.45 | 13.93 |
| CDX72460 | Canola | extracellular | 51.89 | 13.89 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 47.17 | 13.55 |
| CDY09006 | Canola | nucleus | 38.68 | 13.44 |
| CDY41984 | Canola | cytosol | 48.11 | 13.32 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 42.45 | 13.12 |
| CDY42632 | Canola | cytosol | 47.17 | 13.05 |
| CDY53173 | Canola | nucleus, plastid | 45.28 | 12.94 |
| CDX72687 | Canola | cytosol | 40.57 | 12.84 |
| CDY02008 | Canola | cytosol | 43.4 | 12.47 |
| CDY15927 | Canola | cytosol | 45.28 | 12.31 |
| CDX99633 | Canola | mitochondrion | 45.28 | 12.24 |
| CDY00653 | Canola | cytosol | 37.74 | 12.08 |
| CDY29974 | Canola | plasma membrane | 36.79 | 11.82 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 45.28 | 11.51 |
| CDY41986 | Canola | cytosol | 44.34 | 11.41 |
| CDY07711 | Canola | extracellular | 34.91 | 10.51 |
| CDY62432 | Canola | golgi | 40.57 | 9.84 |
| CDY27975 | Canola | nucleus, plastid | 29.25 | 9.34 |
| CDY51549 | Canola | plastid | 13.21 | 7.73 |
| CDY49285 | Canola | golgi, plasma membrane | 39.62 | 7.18 |
| CDY41987 | Canola | plastid | 47.17 | 6.99 |
| CDY42635 | Canola | nucleus | 45.28 | 6.42 |
| CDY44215 | Canola | plasma membrane | 13.21 | 4.9 |
| CDY66883 | Canola | extracellular | 9.43 | 4.76 |
| CDX78384 | Canola | cytosol | 5.66 | 4.17 |
| CDY16283 | Canola | cytosol | 5.66 | 4.11 |
| CDY36006 | Canola | cytosol | 8.49 | 4.07 |
| CDX81183 | Canola | cytosol | 8.49 | 3.8 |
| CDY42631 | Canola | nucleus | 9.43 | 3.48 |
| CDY13276 | Canola | cytosol | 10.38 | 3.01 |
| CDX98384 | Canola | plastid | 8.49 | 2.85 |
| CDY13275 | Canola | mitochondrion | 4.72 | 2.4 |
Protein Annotations
| EnsemblPlants:CDX84184 | EnsemblPlantsGene:GSBRNA2T00141232001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | PFAM:PF00646 | PFscan:PS50181 |
| ProteinID:CDX84184 | ProteinID:CDX84184.1 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EF4136 | MapMan:35.1 |
Description
BnaC04g09460D
Coordinates
chrLK031836:+:623596..624068
Molecular Weight (calculated)
11936.6 Da
IEP (calculated)
8.645
GRAVY (calculated)
0.117
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLEEPRVK SILMLPNDLV LNCLARVSRF EYPSLSLVSK RFHSLIASTE LYQTRTLLGR TESCIYVWFI LNTSKKVLVP IPSPQYNFTS PSTHAGGPCV
101: AICLHP
101: AICLHP
001: MRKKKKKIVL SSTSEAEKVS IPYLPDDLLL NCLARISRLY YPTLSLVSKR FRSLLASTEL YETRRLLGTS ESCLYFFMTE RRNDHEVYGK VEWCHVVHTL
101: PLFNLSRALS CYHCLSHCFL MIIYIILFSI
101: PLFNLSRALS CYHCLSHCFL MIIYIILFSI
Arabidopsis Description
Putative F-box protein At1g77880 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.