CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030332.1-P	Field mustard	cytosol	93.88	94.12
CDY15927	Canola	cytosol	92.6	93.08
CDY12136	Canola	cytosol	10.2	48.19
CDX86750	Canola	cytosol	13.78	47.79
CDY02008	Canola	cytosol	44.9	47.7
CDY41983	Canola	cytosol	30.61	47.06
CDY51548	Canola	plastid	40.56	46.9
CDY57171	Canola	cytosol	38.78	46.34
CDX84184	Canola	cytosol, nucleus, vacuole	12.24	45.28
CDY09006	Canola	nucleus	34.95	44.92
CDY42633	Canola	plastid	31.38	44.73
CDY53174	Canola	cytosol	36.48	44.27
CDY68916	Canola	nucleus	34.18	43.79
CDY41985	Canola	plastid	29.59	43.61
CDY16374	Canola	cytosol, nucleus, peroxisome	37.5	43.49
CDX72687	Canola	cytosol	36.99	43.28
CDX91543	Canola	plastid	37.76	43.15
CDY51549	Canola	plastid	19.9	43.09
CDY53173	Canola	nucleus, plastid	40.31	42.59
CDY63148	Canola	cytosol	35.46	41.99
CDY01110	Canola	cytosol	36.22	40.23
CDY41984	Canola	cytosol	39.29	40.21
CDY00653	Canola	cytosol	33.42	39.58
CDY42632	Canola	cytosol	38.52	39.43
CDY66883	Canola	extracellular	20.66	38.57
CDX75197	Canola	cytosol	34.44	36.49
CDY16283	Canola	cytosol	13.52	36.3
CDY29938	Canola	cytosol, peroxisome, plasma membrane	30.87	35.28
CDY42634	Canola	cytosol, nucleus, plastid	37.24	35.01
CDY41986	Canola	cytosol	36.73	34.95
CDX78384	Canola	cytosol	12.76	34.72
CDY35547	Canola	cytosol	21.94	34.13
CDX72460	Canola	extracellular	34.18	33.84
CDY19889	Canola	cytosol	30.1	33.71
CDY07711	Canola	extracellular	30.1	33.52
CDY42631	Canola	nucleus	24.49	33.45
CDY49284	Canola	extracellular, plasma membrane, vacuole	30.61	32.52
CDY13275	Canola	mitochondrion	16.07	30.29
CDY29974	Canola	plasma membrane	25.26	30.0
CDY27975	Canola	nucleus, plastid	25.26	29.82
CDY62432	Canola	golgi	32.14	28.83
CDX98384	Canola	plastid	23.21	28.8
CDY36006	Canola	cytosol	16.07	28.51
CDY44215	Canola	plasma membrane	19.13	26.22
CDY13276	Canola	cytosol	20.92	22.4
CDX81183	Canola	cytosol	12.24	20.25
CDY49285	Canola	golgi, plasma membrane	29.59	19.83
CDY41987	Canola	plastid	33.93	18.6
CDY42635	Canola	nucleus	33.16	17.38

Protein Annotations

Gene3D:2.120.10.80	Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX99633	ProteinID:CDX99633	ProteinID:CDX99633.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00108142001
InterPro:IPR001810	InterPro:IPR015915	InterPro:IPR032675	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:LRR_dom_sf
PFAM:PF00646	PFAM:PF01344	PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EF0D2D	SEG:seg	:	:

Description

BnaC04g33900D

Coordinates

chrLK031912:+:512788..513966

Molecular Weight (calculated)

44459.7 Da

IEP (calculated)

8.605

GRAVY (calculated)

-0.359

Length

392 amino acids

Sequence
(BLAST)

001: MPPSSTANLY RRILLLIKKR KKKKKKPSPE LPQTPQQSTP ISLLPDDLLL TCFARISRSY YPTLSLVSKR FRSLLSSPEL YETRSLIGRT ESCLYLCLRF
101: PPDPNTRWFT LCRKPEFQNL TNKKKSSGNL LVPVSVLNAP PVDWTTLVAV GPYIYAICGH VEKAPCSNVP FLDCRTHAWL EAPSLRLAYT DSEHDGKMYL
201: AGNGEDPTSL NCIEVFNTKT RTWKPVPPGK RELHGKNMEG KMIVASVNKT TGEKGLAFKP KERTGELLGS NTDWDSPCMI GNIAYYYRSC SGEFEWFDTK
301: NDDVFGKLQG LEGLPEFAGY SCVKLVEHGG KMLVLWDMYS PASGFREEII WCAEIKLERR SCEEIRGEVE WFDAVLKVPK SYEFMYAISC TV

Best Arabidopsis Sequence Match ( AT4G39600.2 )
(BLAST)

001: MSSSTASATT GMKGKKPSIE IATSNPSLPE DLVVSCLARV SRLYYPTLSL VSKSFRSLIA SPDLYKTRSL LGRTESCLYL CLRYSPEDNP RWFTLCRKPN
101: RRTLSKEKNE SSGNLLVPIP IINSPPLEWS SIVAVGSHLY AINGPIEDAP CSNVSFLDCR SHTWLEAPSM RVAHTNSQLD GKMYLAGSSE NVDSLNCIQV
201: FSTKTQTWKP VPFQKRIFGV GDLEGKIYTI CRTECGQGVT IKPKDLTCDV VGFCGEKDWS SVCMIGNIVY FYRPNGEFLW IYSGKGESAR RNLKGLEGLP
301: KFDDYASVKL VDYGGKLMVL WDTYVPESES KEKMIWCAEI SLQKKCNNEE IWGTVEWFDA VLTVPEDCKF VRAIAATV

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:TAIR;Acc:AT4G39600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.