CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040886.1-P	Field mustard	cytosol	87.98	47.04
CDX78384	Canola	cytosol	25.96	37.5
CDX98384	Canola	plastid	56.25	37.03
CDY16283	Canola	cytosol	25.0	35.62
CDY36006	Canola	cytosol	35.1	33.03
AT4G11750.1	Thale cress	cytosol	56.73	30.57
CDY13276	Canola	cytosol	50.48	28.69
CDY41985	Canola	plastid	35.58	27.82
CDX86750	Canola	cytosol	13.94	25.66
CDY42633	Canola	plastid	33.17	25.09
CDY42631	Canola	nucleus	33.65	24.39
CDY53174	Canola	cytosol	37.02	23.84
CDY44215	Canola	plasma membrane	29.33	21.33
CDY29974	Canola	plasma membrane	33.65	21.21
CDY19889	Canola	cytosol	35.58	21.14
CDY51549	Canola	plastid	18.27	20.99
CDY27975	Canola	nucleus, plastid	33.17	20.78
CDY16374	Canola	cytosol, nucleus, peroxisome	33.65	20.71
CDY29938	Canola	cytosol, peroxisome, plasma membrane	34.13	20.7
CDX91543	Canola	plastid	33.17	20.12
CDY53173	Canola	nucleus, plastid	35.1	19.68
CDY41986	Canola	cytosol	38.46	19.42
CDY42634	Canola	cytosol, nucleus, plastid	37.98	18.94
CDX72687	Canola	cytosol	29.81	18.51
CDX72460	Canola	extracellular	35.1	18.43
CDY49284	Canola	extracellular, plasma membrane, vacuole	32.69	18.43
CDX75197	Canola	cytosol	32.69	18.38
CDY41984	Canola	cytosol	33.65	18.28
CDY42632	Canola	cytosol	33.17	18.02
CDY57171	Canola	cytosol	28.37	17.99
CDY07711	Canola	extracellular	29.81	17.61
CDY01110	Canola	cytosol	29.81	17.56
CDX81183	Canola	cytosol	19.71	17.3
CDY63148	Canola	cytosol	26.92	16.92
CDY00653	Canola	cytosol	26.92	16.92
CDX99633	Canola	mitochondrion	30.29	16.07
CDY15927	Canola	cytosol	29.81	15.9
CDY02008	Canola	cytosol	27.4	15.45
CDY09006	Canola	nucleus	22.6	15.41
CDY51548	Canola	plastid	25.0	15.34
CDY41983	Canola	cytosol	18.75	15.29
CDY66883	Canola	extracellular	15.38	15.24
CDY68916	Canola	nucleus	22.12	15.03
CDY62432	Canola	golgi	28.37	13.5
CDY35547	Canola	cytosol	15.38	12.7
CDY49285	Canola	golgi, plasma membrane	34.62	12.31
CDY41987	Canola	plastid	27.88	8.11
CDY42635	Canola	nucleus	27.4	7.62
CDX84184	Canola	cytosol, nucleus, vacuole	2.4	4.72
CDY12136	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY13275	EnsemblPlantsGene:GSBRNA2T00071232001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF01344
ProteinID:CDY13275	ProteinID:CDY13275.1	SEG:seg	SUPFAM:SSF117281	UniParc:UPI0004EDF416	UniProt:A0A078FFU8
MapMan:35.1	:	:	:	:	:

Description

BnaC09g23810DBnaC09g23810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFU8]

Coordinates

chrLK032033:-:585786..586461

Molecular Weight (calculated)

23974.2 Da

IEP (calculated)

9.141

GRAVY (calculated)

-0.026

Length

208 amino acids

Sequence
(BLAST)

001: MWMIRSSPLI RVLDGKLYVL PQRNGFPSNS IEIFDPKTQL WEYVRSPIAE ILGTRSSLIS FAIDGGFYLY GDKCMVYKPK ENKWDVVEYE TGLVWASFRL
101: SCVINNVIYS SKLSRVLKWY DSEGRLWRDL KGLDKLPKLP KSFSRLRLVN YGGKIAVSWE KSGGFEWCAV IAVERRSGQE IYGKIEWCEV VLTVPKSCCL
201: LEFFAVTV

Best Arabidopsis Sequence Match ( AT4G11745.1 )
(BLAST)

001: MVHFAIIDEK LLVSVPIRNY CPRFGLKNII TLGSNIYMIG EFSSTVFFMD CRSHTWHEGP GMQVAAKYNE VSVLDGKIYV VERCKVSVSS NLIQVFDPKT
101: QIWECVASPS TGIRGRFGLN SLAIDGKLYL FGDKNLVYKP KEKTWDVVGF EINFHWIPHD SFCVIDKVII YYYNRHSRLL EWYDPEGSSW GILNGLEELL
201: PKLPRVLVSR HVRLVDYGGK VAIFWEKEVR PLIGYNKITI WCAEIALERR NAQEIYGKIE WCNVVLTLPS SCSIDELNAV SIIV

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.