Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 94.17 | 95.56 |
| Bra022509.1-P | Field mustard | cytosol | 89.8 | 90.86 |
| CDY41983 | Canola | cytosol | 35.57 | 47.84 |
| CDX86750 | Canola | cytosol | 15.74 | 47.79 |
| CDY41985 | Canola | plastid | 35.86 | 46.24 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 14.29 | 46.23 |
| CDY53173 | Canola | nucleus, plastid | 49.85 | 46.09 |
| CDY42633 | Canola | plastid | 35.86 | 44.73 |
| CDY53174 | Canola | cytosol | 38.48 | 40.87 |
| CDY12136 | Canola | cytosol | 9.62 | 39.76 |
| CDY68916 | Canola | nucleus | 35.28 | 39.54 |
| CDY09006 | Canola | nucleus | 34.99 | 39.34 |
| CDY16283 | Canola | cytosol | 16.62 | 39.04 |
| CDY51549 | Canola | plastid | 20.41 | 38.67 |
| CDX78384 | Canola | cytosol | 16.04 | 38.19 |
| CDY00653 | Canola | cytosol | 36.73 | 38.07 |
| CDX99633 | Canola | mitochondrion | 43.15 | 37.76 |
| CDY15927 | Canola | cytosol | 42.57 | 37.44 |
| CDX72687 | Canola | cytosol | 36.44 | 37.31 |
| CDY57171 | Canola | cytosol | 34.4 | 35.98 |
| CDY42631 | Canola | nucleus | 30.03 | 35.89 |
| CDY41984 | Canola | cytosol | 38.19 | 34.2 |
| CDY63148 | Canola | cytosol | 32.94 | 34.14 |
| CDY42632 | Canola | cytosol | 37.9 | 33.94 |
| CDX72460 | Canola | extracellular | 39.07 | 33.84 |
| CDY01110 | Canola | cytosol | 34.4 | 33.43 |
| CDY51548 | Canola | plastid | 32.94 | 33.33 |
| CDY13275 | Canola | mitochondrion | 20.12 | 33.17 |
| CDX75197 | Canola | cytosol | 35.57 | 32.97 |
| CDY02008 | Canola | cytosol | 35.28 | 32.79 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 32.65 | 32.65 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 34.69 | 32.25 |
| CDY07711 | Canola | extracellular | 32.65 | 31.82 |
| CDY29974 | Canola | plasma membrane | 30.03 | 31.21 |
| CDY41986 | Canola | cytosol | 36.73 | 30.58 |
| CDY66883 | Canola | extracellular | 18.66 | 30.48 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 36.73 | 30.22 |
| CDY19889 | Canola | cytosol | 30.32 | 29.71 |
| CDY35547 | Canola | cytosol | 21.28 | 28.97 |
| CDY36006 | Canola | cytosol | 18.37 | 28.51 |
| CDY62432 | Canola | golgi | 34.69 | 27.23 |
| CDY27975 | Canola | nucleus, plastid | 25.95 | 26.81 |
| CDX98384 | Canola | plastid | 24.49 | 26.58 |
| CDY44215 | Canola | plasma membrane | 19.83 | 23.78 |
| CDX81183 | Canola | cytosol | 15.16 | 21.94 |
| CDY49285 | Canola | golgi, plasma membrane | 34.11 | 20.0 |
| CDY13276 | Canola | cytosol | 20.12 | 18.85 |
| CDY41987 | Canola | plastid | 33.24 | 15.94 |
| CDY42635 | Canola | nucleus | 32.94 | 15.11 |
Protein Annotations
| EnsemblPlants:CDX91543 | EnsemblPlantsGene:GSBRNA2T00152926001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF23 | PFAM:PF00646 | PFscan:PS50181 | ProteinID:CDX91543 | ProteinID:CDX91543.1 | SEG:seg |
| SMART:SM00256 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EEA4CF | MapMan:35.1 | : |
Description
BnaC02g16170D
Coordinates
chrLK031868:+:229386..230417
Molecular Weight (calculated)
38405.7 Da
IEP (calculated)
8.520
GRAVY (calculated)
-0.329
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSPDRKGKA TTEQSSPLPS LPDDLLLTCF ARVSTLHYPT LTLVSKRFQS LIASPELYRI RSTLGRTQSC LYVCFGSDHD RNPRWFTLCL KPDRNVTNGS
101: SGNVLVPTSV PHSAPAHWSG LIGGPSNDIY NIGGPLEDAP SSSEPGNMWV DPMVDVLDRK IYVTRGCNPN TRTWDPEFST PPVSTPPAFV SLVVRKKVYM
201: FGSSGDSAYK PKDGQWERFW GWKPSLGWFS CCVVEKVLYR YRSGEFKWYD TKAGHWRKLK GLKGLPKFVS YGFQLVDYGG KLAVVWAELV PNGGDKKKVV
301: WCAVITLERP NSGDEIWGEI EWCDVVCTVP KSYQLEYALD ATL
101: SGNVLVPTSV PHSAPAHWSG LIGGPSNDIY NIGGPLEDAP SSSEPGNMWV DPMVDVLDRK IYVTRGCNPN TRTWDPEFST PPVSTPPAFV SLVVRKKVYM
201: FGSSGDSAYK PKDGQWERFW GWKPSLGWFS CCVVEKVLYR YRSGEFKWYD TKAGHWRKLK GLKGLPKFVS YGFQLVDYGG KLAVVWAELV PNGGDKKKVV
301: WCAVITLERP NSGDEIWGEI EWCDVVCTVP KSYQLEYALD ATL
001: MSSPEKKRKT TKKPSPTPQS TTPNPSLPDD LVVSCLARVS RLYYPTLSLV SKSFRSLIAS PDLYKTRSLL GRTESCLYVC LQEKDSDPNP RWFTLCLKPN
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV
Arabidopsis Description
F-box/kelch-repeat protein At4g39550 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVA3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.