Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000083.1-P | Field mustard | extracellular | 97.44 | 97.44 |
| CDY62432 | Canola | golgi | 86.08 | 69.34 |
| CDY36006 | Canola | cytosol | 34.66 | 55.2 |
| CDY29974 | Canola | plasma membrane | 47.73 | 50.91 |
| CDY27975 | Canola | nucleus, plastid | 46.88 | 49.7 |
| AT5G51250.1 | Thale cress | cytosol | 46.59 | 44.57 |
| AT3G08810.1 | Thale cress | nucleus | 43.18 | 44.31 |
| CDX78384 | Canola | cytosol | 17.61 | 43.06 |
| CDY09006 | Canola | nucleus | 36.65 | 42.3 |
| CDY68916 | Canola | nucleus | 36.08 | 41.5 |
| CDY41983 | Canola | cytosol | 29.83 | 41.18 |
| CDY16283 | Canola | cytosol | 16.76 | 40.41 |
| AT2G03460.1 | Thale cress | plastid | 28.41 | 38.91 |
| CDY00653 | Canola | cytosol | 36.36 | 38.67 |
| AT3G06570.1 | Thale cress | cytosol, plastid | 41.48 | 37.44 |
| CDX86750 | Canola | cytosol | 11.65 | 36.28 |
| CDY42633 | Canola | plastid | 27.84 | 35.64 |
| CDY41985 | Canola | plastid | 26.42 | 34.96 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 10.51 | 34.91 |
| CDY53173 | Canola | nucleus, plastid | 36.08 | 34.23 |
| CDY63148 | Canola | cytosol | 32.1 | 34.14 |
| CDY01110 | Canola | cytosol | 33.24 | 33.14 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 31.82 | 33.14 |
| CDX91543 | Canola | plastid | 31.82 | 32.65 |
| CDY42631 | Canola | nucleus | 26.42 | 32.4 |
| CDY53174 | Canola | cytosol | 29.26 | 31.89 |
| CDX72687 | Canola | cytosol | 30.11 | 31.64 |
| CDY12136 | Canola | cytosol | 7.1 | 30.12 |
| CDX99633 | Canola | mitochondrion | 33.52 | 30.1 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 31.53 | 30.08 |
| CDY13275 | Canola | mitochondrion | 17.61 | 29.81 |
| CDX72460 | Canola | extracellular | 33.52 | 29.8 |
| CDY57171 | Canola | cytosol | 27.56 | 29.57 |
| CDY15927 | Canola | cytosol | 32.67 | 29.49 |
| CDY41984 | Canola | cytosol | 31.25 | 28.72 |
| CDY35547 | Canola | cytosol | 20.45 | 28.57 |
| CDY42632 | Canola | cytosol | 30.4 | 27.94 |
| CDY02008 | Canola | cytosol | 29.26 | 27.91 |
| CDX75197 | Canola | cytosol | 29.26 | 27.84 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 32.95 | 27.82 |
| CDY51549 | Canola | plastid | 14.2 | 27.62 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 26.7 | 27.41 |
| CDY19889 | Canola | cytosol | 26.99 | 27.14 |
| CDY66883 | Canola | extracellular | 16.19 | 27.14 |
| CDY41986 | Canola | cytosol | 31.53 | 26.94 |
| CDY51548 | Canola | plastid | 25.85 | 26.84 |
| CDY44215 | Canola | plasma membrane | 20.74 | 25.52 |
| CDX98384 | Canola | plastid | 21.02 | 23.42 |
| CDX81183 | Canola | cytosol | 14.49 | 21.52 |
| CDY49285 | Canola | golgi, plasma membrane | 29.55 | 17.78 |
| CDY41987 | Canola | plastid | 31.25 | 15.38 |
| CDY42635 | Canola | nucleus | 31.25 | 14.71 |
| CDY13276 | Canola | cytosol | 15.06 | 14.48 |
Protein Annotations
| EnsemblPlants:CDY07711 | EnsemblPlantsGene:GSBRNA2T00124827001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | ProteinID:CDY07711 | ProteinID:CDY07711.1 |
| SUPFAM:SSF117281 | UniParc:UPI0004EDBAD0 | UniProt:A0A078F2W4 | MapMan:35.1 | : | : |
Description
BnaA03g18000DBnaA03g18000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2W4]
Coordinates
chrLK031980:+:575404..576462
Molecular Weight (calculated)
39548.8 Da
IEP (calculated)
9.278
GRAVY (calculated)
0.023
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MIVARVPILY YRTLSLVSKS FRSMVVSPEL YKVRSVLGLT ESCLYVCLRF GLGSYKWYTL SSKSKSSGGY VLASVPMPGD DSPRVAGLGF GYSDLVAVGS
101: DIYNIGQADK TTPTSSVSIL DCKSHMWRKA PSMPMELGSL SAIVLDRNIF VLGRRYHQYA SWKSLLQVFN TNTQTWDIPC CVLDQASHLF NFNGNLHAVN
201: IFGWVFAFNS KQGKWDQLVE IDPSVGEIKY SESYCEIDNV LYSVSKEGAL RWYDTDKTRW RDLKSLVGLP KLPRRFSGYG SYVKLTAYGV GKMLVFWSRK
301: SNILVSHMET IYCAVIALKK DKGDCWGKLE WYDGVLSVLA GTELVKIFSV TL
101: DIYNIGQADK TTPTSSVSIL DCKSHMWRKA PSMPMELGSL SAIVLDRNIF VLGRRYHQYA SWKSLLQVFN TNTQTWDIPC CVLDQASHLF NFNGNLHAVN
201: IFGWVFAFNS KQGKWDQLVE IDPSVGEIKY SESYCEIDNV LYSVSKEGAL RWYDTDKTRW RDLKSLVGLP KLPRRFSGYG SYVKLTAYGV GKMLVFWSRK
301: SNILVSHMET IYCAVIALKK DKGDCWGKLE WYDGVLSVLA GTELVKIFSV TL
001: MSYPERKRKR SRWSKPHSTQ NPSPSLPDDV LLSIFARVSR LYYPTLSHVS ESFRSLLASP ELYKARSLSG NTEICLYVCL RCSTGYRWFS LSRKPDQTLT
101: YEERKSSGYA LARVPIPGGS PNVRSSSLVA VGSDIYNICG SINKASSSSS VSILDCQSHT WREAPSLPVE LSSISASVRD GNQGGHGYSD SRKNSFKVFA
201: YNSKEGRWDH LVGLGAGSFM LPDSYCVIDN VSYSVSDGMF RWYDTEVRRW KDLRGLFQLP KFSAGACVIL ADYGGKMAVL WDQLPYHHGF HKTIQCAVIA
301: LERRTSFVFR EKSCQIWGKV EWVDDLLTVP TSYDLVKVLV ATL
101: YEERKSSGYA LARVPIPGGS PNVRSSSLVA VGSDIYNICG SINKASSSSS VSILDCQSHT WREAPSLPVE LSSISASVRD GNQGGHGYSD SRKNSFKVFA
201: YNSKEGRWDH LVGLGAGSFM LPDSYCVIDN VSYSVSDGMF RWYDTEVRRW KDLRGLFQLP KFSAGACVIL ADYGGKMAVL WDQLPYHHGF HKTIQCAVIA
301: LERRTSFVFR EKSCQIWGKV EWVDDLLTVP TSYDLVKVLV ATL
Arabidopsis Description
F-box/kelch-repeat protein At3g08810 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9X9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.