Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- plastid 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G38680.1 | Thale cress | cytosol | 53.53 | 55.18 |
| AT3G09750.1 | Thale cress | mitochondrion | 23.64 | 54.04 |
| AT3G08810.1 | Thale cress | nucleus | 49.73 | 53.35 |
| AT2G03460.1 | Thale cress | plastid | 37.23 | 53.31 |
| AT5G38670.1 | Thale cress | cytosol, plastid | 41.58 | 52.58 |
| AT3G06570.1 | Thale cress | cytosol, plastid | 53.53 | 50.51 |
| AT4G39550.1 | Thale cress | nucleus | 52.17 | 48.98 |
| AT4G25710.1 | Thale cress | cytosol | 51.9 | 48.97 |
| Bra036150.1-P | Field mustard | plastid | 48.64 | 48.25 |
| AT1G19930.1 | Thale cress | cytosol | 44.29 | 47.38 |
| Bra000083.1-P | Field mustard | extracellular | 45.11 | 47.16 |
| CDY07711 | Canola | extracellular | 44.57 | 46.59 |
| AT4G39580.1 | Thale cress | cytosol | 47.01 | 46.13 |
| AT4G39560.1 | Thale cress | plastid | 32.61 | 45.11 |
| AT4G39570.1 | Thale cress | nucleus, plastid | 48.37 | 45.06 |
| CDX78384 | Canola | cytosol | 17.39 | 44.44 |
| AT5G49000.2 | Thale cress | nucleus | 44.84 | 44.35 |
| CDY16283 | Canola | cytosol | 17.39 | 43.84 |
| Bra029716.1-P | Field mustard | mitochondrion | 41.85 | 43.63 |
| AT4G39600.2 | Thale cress | plastid | 44.29 | 43.12 |
| Bra006063.1-P | Field mustard | cytosol | 21.2 | 42.16 |
| AT4G34170.1 | Thale cress | cytosol | 33.42 | 41.98 |
| AT4G05620.1 | Thale cress | plastid | 14.95 | 41.67 |
| Bra029718.1-P | Field mustard | nucleus | 44.57 | 41.31 |
| CDY29974 | Canola | plasma membrane | 36.96 | 41.21 |
| AT1G60570.1 | Thale cress | cytosol | 41.85 | 40.42 |
| AT1G77880.1 | Thale cress | cytosol | 14.13 | 40.0 |
| AT4G23580.1 | Thale cress | cytosol | 41.58 | 39.95 |
| CDY36006 | Canola | cytosol | 23.91 | 39.82 |
| AT5G48990.1 | Thale cress | cytosol, plastid | 39.4 | 38.98 |
| CDY62432 | Canola | golgi | 46.2 | 38.9 |
| AT1G61540.1 | Thale cress | cytosol | 42.12 | 38.56 |
| AT4G39590.1 | Thale cress | plastid | 41.85 | 38.31 |
| AT4G11770.1 | Thale cress | cytosol | 40.22 | 37.37 |
| CDY27975 | Canola | nucleus, plastid | 33.7 | 37.35 |
| AT4G33900.1 | Thale cress | cytosol | 37.5 | 36.41 |
| AT4G11750.1 | Thale cress | cytosol | 37.77 | 36.01 |
| AT3G43710.1 | Thale cress | cytosol | 36.68 | 35.71 |
| AT2G20380.1 | Thale cress | cytosol | 33.42 | 35.34 |
| AT5G48980.1 | Thale cress | nucleus | 37.77 | 34.84 |
| AT4G39290.1 | Thale cress | cytosol | 33.15 | 33.42 |
| AT4G11745.1 | Thale cress | cytosol | 25.54 | 33.1 |
| CDX81183 | Canola | cytosol | 14.95 | 23.21 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:835199 | ProteinID:AED96058.1 | ArrayExpress:AT5G51250 | EnsemblPlantsGene:AT5G51250 |
| RefSeq:AT5G51250 | TAIR:AT5G51250 | RefSeq:AT5G51250-TAIR-G | EnsemblPlants:AT5G51250.1 | TAIR:AT5G51250.1 | Unigene:At.55483 |
| ProteinID:BAA97388.1 | EMBL:DQ056714 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | InterPro:Kelch_2 |
| RefSeq:NP_199938.1 | PFAM:PF00646 | PFAM:PF01344 | PFAM:PF07646 | PFscan:PS50181 | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF23 | UniProt:Q9LU49 | SMART:SM00256 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI00000A094C |
| SEG:seg | : | : | : | : | : |
Description
F-box/kelch-repeat protein At5g51250 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU49]
Coordinates
chr5:+:20830743..20831849
Molecular Weight (calculated)
41476.9 Da
IEP (calculated)
9.119
GRAVY (calculated)
-0.118
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLPDDLLL SIFARISRLY YPTLSLVSKS FRSLLASPDL YKARSLLGHT ESCLYVCFHF DSGPNTHWFT LCRKPDGTLT NDTSKKKKSN GYVLATVPIP
101: HSPPANFSSL VAVGSDIYNI GGSIYLGPSS SSVSILDSQS HMWREAPSLR VELMSHSASV LDRKIYVAGS YKDGNGDSNS CKNLFEVFDT KTQVWHPEPI
201: PCSKTKGIFY SKSACIDGKF HVETTHGVVY AYKEGRWDKA IPTMFGMRAS YSFCEINNVL FYIHRGVFRW YDTKLRMWRI LKGLLGLPSL PENMFVRLAD
301: YGGKMAVLWE EDRPSCGAGG RDEMMIWCAV IALKRHLNFS FWGKVEWFDH VLTVPKQHVF VKALTASL
101: HSPPANFSSL VAVGSDIYNI GGSIYLGPSS SSVSILDSQS HMWREAPSLR VELMSHSASV LDRKIYVAGS YKDGNGDSNS CKNLFEVFDT KTQVWHPEPI
201: PCSKTKGIFY SKSACIDGKF HVETTHGVVY AYKEGRWDKA IPTMFGMRAS YSFCEINNVL FYIHRGVFRW YDTKLRMWRI LKGLLGLPSL PENMFVRLAD
301: YGGKMAVLWE EDRPSCGAGG RDEMMIWCAV IALKRHLNFS FWGKVEWFDH VLTVPKQHVF VKALTASL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.