Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G39560.1 | Thale cress | plastid | 38.71 | 54.14 |
| AT4G39550.1 | Thale cress | nucleus | 56.72 | 53.83 |
| AT4G39580.1 | Thale cress | cytosol | 49.73 | 49.33 |
| AT5G38680.1 | Thale cress | cytosol | 46.24 | 48.18 |
| AT1G19930.1 | Thale cress | cytosol | 43.82 | 47.38 |
| AT4G39570.1 | Thale cress | nucleus, plastid | 49.73 | 46.84 |
| AT4G39600.2 | Thale cress | plastid | 47.58 | 46.83 |
| AT5G38670.1 | Thale cress | cytosol, plastid | 36.29 | 46.39 |
| AT1G60570.1 | Thale cress | cytosol | 46.51 | 45.41 |
| AT5G48990.1 | Thale cress | cytosol, plastid | 44.89 | 44.89 |
| AT5G51250.1 | Thale cress | cytosol | 44.35 | 44.84 |
| AT3G08810.1 | Thale cress | nucleus | 41.13 | 44.61 |
| AT4G34170.1 | Thale cress | cytosol | 33.87 | 43.0 |
| AT4G11770.1 | Thale cress | cytosol | 44.89 | 42.17 |
| AT4G05620.1 | Thale cress | plastid | 14.78 | 41.67 |
| AT4G39590.1 | Thale cress | plastid | 44.89 | 41.54 |
| AT3G06570.1 | Thale cress | cytosol, plastid | 43.01 | 41.03 |
| AT3G09750.1 | Thale cress | mitochondrion | 17.74 | 40.99 |
| AT5G48980.1 | Thale cress | nucleus | 43.82 | 40.85 |
| AT4G25710.1 | Thale cress | cytosol | 42.47 | 40.51 |
| AT4G11750.1 | Thale cress | cytosol | 40.86 | 39.38 |
| AT3G43710.1 | Thale cress | cytosol | 39.78 | 39.15 |
| AT4G23580.1 | Thale cress | cytosol | 40.05 | 38.9 |
| AT1G61540.1 | Thale cress | cytosol | 41.94 | 38.81 |
| AT2G20380.1 | Thale cress | cytosol | 36.02 | 38.51 |
| AT4G33900.1 | Thale cress | cytosol | 37.9 | 37.2 |
| AT2G03460.1 | Thale cress | plastid | 25.54 | 36.97 |
| AT4G39290.1 | Thale cress | cytosol | 35.75 | 36.44 |
| AT1G77880.1 | Thale cress | cytosol | 12.37 | 35.38 |
| AT4G11745.1 | Thale cress | cytosol | 26.08 | 34.15 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:834959 | ProteinID:AED95754.1 | ProteinID:AED95755.1 | EMBL:AK117938 |
| ArrayExpress:AT5G49000 | EnsemblPlantsGene:AT5G49000 | RefSeq:AT5G49000 | TAIR:AT5G49000 | RefSeq:AT5G49000-TAIR-G | EnsemblPlants:AT5G49000.2 |
| TAIR:AT5G49000.2 | ProteinID:BAB10324.1 | EMBL:BT029493 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| RefSeq:NP_001119398.1 | RefSeq:NP_199711.2 | PFAM:PF00646 | PFAM:PF01344 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF23 | UniProt:Q9FI70 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| UniParc:UPI00000A0BEA | SEG:seg | : | : | : | : |
Description
F-box/kelch-repeat protein At5g49000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI70]
Coordinates
chr5:+:19864410..19865825
Molecular Weight (calculated)
42075.4 Da
IEP (calculated)
9.311
GRAVY (calculated)
-0.319
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPERKRKK RSLEPSPEST PNPSLPDDLI VSILARVSRL YYPILSLVSK SSRTLVTSPE LYKTRSFFNR TESCLYVCLD FPPDPNPRWF TLYRKPNQNI
101: TEKTKNSSGF VLAPIPNHHS HSSSIVAIGS NIYAIGGSIE NAPSSKVSIL DCRSHTWHEA PSMRMKRNYP AANVVDGKIY VAGGLEEFDS SKWMEVFDIK
201: TQTWEFVLSP LAERFIYRSL VIEGEIYIFG DKVVTYKPKE DRWGGVGEHQ SMDLGLFFHS YCVIDNVLYC YRPGGIKWYE SEKRSWRKLR GLKGLSKLAS
301: SCVKLADYGG KMALLWDKYI PCSGNKSHSI SCAVVSLERC KNQGIRGKVE WFDDMLTVPS SYNFVGALAA TL
101: TEKTKNSSGF VLAPIPNHHS HSSSIVAIGS NIYAIGGSIE NAPSSKVSIL DCRSHTWHEA PSMRMKRNYP AANVVDGKIY VAGGLEEFDS SKWMEVFDIK
201: TQTWEFVLSP LAERFIYRSL VIEGEIYIFG DKVVTYKPKE DRWGGVGEHQ SMDLGLFFHS YCVIDNVLYC YRPGGIKWYE SEKRSWRKLR GLKGLSKLAS
301: SCVKLADYGG KMALLWDKYI PCSGNKSHSI SCAVVSLERC KNQGIRGKVE WFDDMLTVPS SYNFVGALAA TL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.