Factsheet for AT4G39290.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G34170.1	Thale cress	cytosol	39.73	49.49
AT4G23580.1	Thale cress	cytosol	49.32	47.0
AT4G33900.1	Thale cress	cytosol	47.67	45.91
AT3G43710.1	Thale cress	cytosol	45.21	43.65
AT4G39560.1	Thale cress	plastid	28.22	38.72
AT5G38670.1	Thale cress	cytosol, plastid	29.86	37.46
AT4G39580.1	Thale cress	cytosol	38.08	37.07
AT4G39550.1	Thale cress	nucleus	39.45	36.73
AT5G49000.2	Thale cress	nucleus	36.44	35.75
AT4G11770.1	Thale cress	cytosol	38.36	35.35
AT5G38680.1	Thale cress	cytosol	33.97	34.73
AT4G39600.2	Thale cress	plastid	35.89	34.66
AT1G61540.1	Thale cress	cytosol	37.53	34.08
AT1G19930.1	Thale cress	cytosol	32.05	34.01
AT1G77880.1	Thale cress	cytosol	12.05	33.85
AT3G09750.1	Thale cress	mitochondrion	14.79	33.54
AT5G51250.1	Thale cress	cytosol	33.42	33.15
AT4G11750.1	Thale cress	cytosol	34.79	32.9
AT4G39570.1	Thale cress	nucleus, plastid	35.34	32.66
AT3G08810.1	Thale cress	nucleus	30.68	32.65
AT2G03460.1	Thale cress	plastid	22.19	31.52
AT5G48990.1	Thale cress	cytosol, plastid	32.05	31.45
AT4G39590.1	Thale cress	plastid	34.52	31.34
AT4G05620.1	Thale cress	plastid	11.23	31.06
AT1G60570.1	Thale cress	cytosol	32.05	30.71
AT4G25710.1	Thale cress	cytosol	32.33	30.26
AT3G06570.1	Thale cress	cytosol, plastid	31.78	29.74
AT4G11745.1	Thale cress	cytosol	23.01	29.58
AT5G48980.1	Thale cress	nucleus	31.23	28.57
AT2G20380.1	Thale cress	cytosol	23.84	25.0

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:830085	UniProt:A0A178V1G2	ProteinID:AEE87052.1	ArrayExpress:AT4G39290
EnsemblPlantsGene:AT4G39290	RefSeq:AT4G39290	TAIR:AT4G39290	RefSeq:AT4G39290-TAIR-G	EnsemblPlants:AT4G39290.1	TAIR:AT4G39290.1
Unigene:At.65472	ProteinID:CAB43644.1	ProteinID:CAB80592.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
RefSeq:NP_195640.1	ProteinID:OAO99457.1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23
UniProt:Q9T035	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00000A6AFC

Description

Putative F-box/kelch-repeat protein At4g39290 [Source:UniProtKB/Swiss-Prot;Acc:Q9T035]

Coordinates

chr4:-:18285205..18286302

Molecular Weight (calculated)

42174.9 Da

IEP (calculated)

8.629

GRAVY (calculated)

-0.205

Length

365 amino acids

Sequence
(BLAST)

001: MLMSKEDESQ MTFSMLPDDL VLNCLARVSK VYYPSLSFVS KKFRSLIAST ELQELRSFLG CTSSGLYVCL RFRTNTDYRQ ICFTLRQKIS SSAKILVPIS
101: SLDSPFDYRS GVVAVGSDIY AIGGRNLNNS ASSKVMVMDC RSHTWREAPS MRVARDDFPS TCVLNGKIYV IGGCKNLDST NWIEVFDTKT QTWEFLQIPN
201: EEVCRGFNYK IVGYKEAIHV SSLENNRATF MTYEIHKGRW REPHLSLSHG FHFSNCVIEN VFYRYSYEML QWYDSCRKIW KNLKGFVRRS IMNPRGEGVK
301: MVNYGGNIVL LWEECVTIKK KLIWCEEVVI EKKHQGEIWG LLKWSDVVFI TDEKNQLVRA LAPDV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.