Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G48990.1 | Thale cress | cytosol, plastid | 54.02 | 50.54 |
| AT4G05620.1 | Thale cress | plastid | 15.8 | 41.67 |
| CDY51549 | Canola | plastid | 21.55 | 41.44 |
| AT5G48980.1 | Thale cress | nucleus | 47.41 | 41.35 |
| AT4G39600.2 | Thale cress | plastid | 42.82 | 39.42 |
| CDY57171 | Canola | cytosol | 37.07 | 39.33 |
| CDY51548 | Canola | plastid | 37.36 | 38.35 |
| Bra018362.1-P | Field mustard | cytosol | 40.52 | 37.4 |
| CDY02008 | Canola | cytosol | 38.22 | 36.04 |
| AT5G49000.2 | Thale cress | nucleus | 38.51 | 36.02 |
| CDY66883 | Canola | extracellular | 21.55 | 35.71 |
| AT1G19930.1 | Thale cress | cytosol | 34.77 | 35.17 |
| AT4G39550.1 | Thale cress | nucleus | 37.93 | 33.67 |
| AT5G51250.1 | Thale cress | cytosol | 35.34 | 33.42 |
| AT3G08810.1 | Thale cress | nucleus | 32.76 | 33.24 |
| AT1G77880.1 | Thale cress | cytosol | 12.36 | 33.08 |
| AT4G39580.1 | Thale cress | cytosol | 35.34 | 32.8 |
| AT5G38670.1 | Thale cress | cytosol, plastid | 27.3 | 32.65 |
| AT5G38680.1 | Thale cress | cytosol | 32.76 | 31.93 |
| AT4G25710.1 | Thale cress | cytosol | 35.06 | 31.28 |
| AT3G09750.1 | Thale cress | mitochondrion | 14.37 | 31.06 |
| AT4G39570.1 | Thale cress | nucleus, plastid | 34.2 | 30.13 |
| AT4G39560.1 | Thale cress | plastid | 22.7 | 29.7 |
| AT1G60570.1 | Thale cress | cytosol | 32.47 | 29.66 |
| AT4G11770.1 | Thale cress | cytosol | 33.62 | 29.55 |
| AT4G23580.1 | Thale cress | cytosol | 32.47 | 29.5 |
| AT3G06570.1 | Thale cress | cytosol, plastid | 33.05 | 29.49 |
| AT4G34170.1 | Thale cress | cytosol | 23.85 | 28.33 |
| AT4G33900.1 | Thale cress | cytosol | 30.46 | 27.97 |
| AT4G39590.1 | Thale cress | plastid | 32.18 | 27.86 |
| AT4G11750.1 | Thale cress | cytosol | 30.75 | 27.72 |
| AT1G61540.1 | Thale cress | cytosol | 30.17 | 26.12 |
| AT3G43710.1 | Thale cress | cytosol | 27.59 | 25.4 |
| AT2G03460.1 | Thale cress | plastid | 18.39 | 24.9 |
| AT4G39290.1 | Thale cress | cytosol | 25.0 | 23.84 |
| AT4G11745.1 | Thale cress | cytosol | 17.24 | 21.13 |
Protein Annotations
| MapMan:35.1 | EntrezGene:816557 | ProteinID:AAD21750.1 | ProteinID:AEC07000.1 | ArrayExpress:AT2G20380 | EnsemblPlantsGene:AT2G20380 |
| RefSeq:AT2G20380 | TAIR:AT2G20380 | RefSeq:AT2G20380-TAIR-G | EnsemblPlants:AT2G20380.1 | TAIR:AT2G20380.1 | Unigene:At.49347 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_179628.1 | PFAM:PF00646 | PFAM:PF01344 |
| PFscan:PS50181 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | UniProt:Q9SK64 | SMART:SM00256 | SUPFAM:SSF117281 |
| SUPFAM:SSF81383 | UniParc:UPI00000A3CF6 | : | : | : | : |
Description
F-box protein At2g20380 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK64]
Coordinates
chr2:-:8794818..8795980
Molecular Weight (calculated)
39664.3 Da
IEP (calculated)
10.071
GRAVY (calculated)
-0.194
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSPEKKRR KKLSPESNSL PNDLIVTILA RLSQSYYPKL SLVSKTFRAI LASPELYQTR ILLSRTETFL YVCLSFPGEP NPGWFTLYRK PNQTLTTKKK
101: KNSVHLLAPI LNSPPVEFPS LIAVGSYLYA FRAAIEEGTS DSLNCVEVYN TDTQTWIPVP PNKRIFKLQH MKGMLYMKVS KLLSFVAQDA EELAPLFPKL
201: RSLLSTEVVA FKPKVSEGYE VLGFSVNTDL GRGSFCMIEE ITYHYDPSVK FRWRRRQGGV WRSLVGLEGL PKFARYSSVK LADCGGKLVV LWHKYVPASG
301: YEEKMVWCAE ISLEKRSKKE IWGKIEWFDA VLRVPKYYQF VGAKSATV
101: KNSVHLLAPI LNSPPVEFPS LIAVGSYLYA FRAAIEEGTS DSLNCVEVYN TDTQTWIPVP PNKRIFKLQH MKGMLYMKVS KLLSFVAQDA EELAPLFPKL
201: RSLLSTEVVA FKPKVSEGYE VLGFSVNTDL GRGSFCMIEE ITYHYDPSVK FRWRRRQGGV WRSLVGLEGL PKFARYSSVK LADCGGKLVV LWHKYVPASG
301: YEEKMVWCAE ISLEKRSKKE IWGKIEWFDA VLRVPKYYQF VGAKSATV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.