Factsheet for Bra018362.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57171	Canola	cytosol	85.15	97.87
Bra040994.1-P	Field mustard	cytosol	11.94	50.0
AT4G39600.2	Thale cress	plastid	48.81	48.68
AT5G48990.1	Thale cress	cytosol, plastid	46.95	47.58
AT5G48980.1	Thale cress	nucleus	49.87	47.12
Bra001343.1-P	Field mustard	nucleus	32.89	46.62
Bra030332.1-P	Field mustard	cytosol	47.48	45.78
Bra011856.1-P	Field mustard	nucleus	21.22	41.88
AT2G20380.1	Thale cress	cytosol	37.4	40.52
Bra011854.1-P	Field mustard	plastid	41.11	39.85
Bra022509.1-P	Field mustard	cytosol	35.54	39.53
Bra033628.1-P	Field mustard	nucleus	40.05	38.62
Bra032688.1-P	Field mustard	cytosol	35.81	38.24
Bra023735.1-P	Field mustard	nucleus	37.14	37.43
Bra036150.1-P	Field mustard	plastid	36.07	36.66
Bra017635.1-P	Field mustard	plasma membrane	35.01	35.2
Bra011300.1-P	Field mustard	cytosol	35.28	34.82
Bra040886.1-P	Field mustard	cytosol	35.01	33.93
Bra011855.1-P	Field mustard	plastid	22.02	33.33
Bra029716.1-P	Field mustard	mitochondrion	30.5	32.58
Bra000083.1-P	Field mustard	extracellular	30.24	32.39
Bra011853.1-P	Field mustard	cytosol	35.01	32.12
Bra017634.1-P	Field mustard	extracellular	18.04	32.08
Bra011852.1-P	Field mustard	cytosol	29.97	31.65
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	22.81	31.27
Bra006063.1-P	Field mustard	cytosol	15.12	30.81
Bra029718.1-P	Field mustard	nucleus	32.1	30.48
Bra011851.1-P	Field mustard	cytosol, plastid	33.42	30.36
Bra002939.1-P	Field mustard	cytosol	12.2	24.08

Protein Annotations

EnsemblPlants:Bra018362.1	EnsemblPlants:Bra018362.1-P	EnsemblPlantsGene:Bra018362	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF01344	SEG:seg	SMART:SM00256	SUPFAM:SSF117281
UniParc:UPI0002547C8D	UniProt:M4DPC1	MapMan:35.1	:	:	:

Description

AT4G39600 (E=1e-097) | kelch repeat-containing F-box family protein

Coordinates

chrA05:+:7776889..7778022

Molecular Weight (calculated)

42487.1 Da

IEP (calculated)

9.580

GRAVY (calculated)

-0.268

Length

377 amino acids

Sequence
(BLAST)

001: MSLTAIGSGE EPPSKKLAIE PTTNLPLPDE LVLGCFARAS RLHYPILSLV SKTFRSLTSS PELYQTRSLL NRTENCLYVC LQFPNDPCLR WFTLCRKPDK
101: ALNNKKKKKK SSTSGNVLGQ VRILGSPPPV EWSNLVAVGH KLYAVRDGPC SSDVFFLDCR THTWVETPSL RLAHTFPECD GMIYLPGGSE SPDSLNFVQV
201: FDVKTQTWKP VPPEKKIFRL RDLQGRAYQN NDVAAASSRR WLVVARLKDR TVSVEGSGTL CLIEKAFYRY ASSSGELLWS NRSTESDVWR KVKGLEGLPK
301: FTRYSNVYLV ASGGKLVVFW DKYVPARGGY KEKMIWCAEI SLETRSSEEV WGKVEWFDAV LTVPKSYKFV YSIAATL

Best Arabidopsis Sequence Match ( AT4G39600.2 )
(BLAST)

001: MSSSTASATT GMKGKKPSIE IATSNPSLPE DLVVSCLARV SRLYYPTLSL VSKSFRSLIA SPDLYKTRSL LGRTESCLYL CLRYSPEDNP RWFTLCRKPN
101: RRTLSKEKNE SSGNLLVPIP IINSPPLEWS SIVAVGSHLY AINGPIEDAP CSNVSFLDCR SHTWLEAPSM RVAHTNSQLD GKMYLAGSSE NVDSLNCIQV
201: FSTKTQTWKP VPFQKRIFGV GDLEGKIYTI CRTECGQGVT IKPKDLTCDV VGFCGEKDWS SVCMIGNIVY FYRPNGEFLW IYSGKGESAR RNLKGLEGLP
301: KFDDYASVKL VDYGGKLMVL WDTYVPESES KEKMIWCAEI SLQKKCNNEE IWGTVEWFDA VLTVPEDCKF VRAIAATV

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:TAIR;Acc:AT4G39600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.