Factsheet for Bra040994.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040886.1-P	Field mustard	cytosol	85.56	19.79
Bra006063.1-P	Field mustard	cytosol	40.0	19.46
Bra001343.1-P	Field mustard	nucleus	43.33	14.66
AT4G11750.1	Thale cress	cytosol	60.0	13.99
Bra022509.1-P	Field mustard	cytosol	50.0	13.27
CDY13276	Canola	cytosol	52.22	12.84
Bra018362.1-P	Field mustard	cytosol	50.0	11.94
Bra033628.1-P	Field mustard	nucleus	51.11	11.76
Bra011855.1-P	Field mustard	plastid	31.11	11.24
Bra011854.1-P	Field mustard	plastid	46.67	10.8
Bra029716.1-P	Field mustard	mitochondrion	42.22	10.76
Bra002939.1-P	Field mustard	cytosol	22.22	10.47
Bra000083.1-P	Field mustard	extracellular	38.89	9.94
Bra036150.1-P	Field mustard	plastid	40.0	9.7
Bra032688.1-P	Field mustard	cytosol	37.78	9.63
Bra023735.1-P	Field mustard	nucleus	40.0	9.63
Bra029718.1-P	Field mustard	nucleus	42.22	9.57
Bra030332.1-P	Field mustard	cytosol	41.11	9.46
Bra017635.1-P	Field mustard	plasma membrane	35.56	8.53
Bra011853.1-P	Field mustard	cytosol	38.89	8.52
Bra011300.1-P	Field mustard	cytosol	34.44	8.12
Bra011851.1-P	Field mustard	cytosol, plastid	35.56	7.71
Bra011852.1-P	Field mustard	cytosol	30.0	7.56
Bra017634.1-P	Field mustard	extracellular	15.56	6.6
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	3.33	1.09
Bra011856.1-P	Field mustard	nucleus	2.22	1.05

Protein Annotations

EnsemblPlants:Bra040994.1	EnsemblPlants:Bra040994.1-P	EnsemblPlantsGene:Bra040994	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SEG:seg
UniParc:UPI000253EBA9	UniProt:M4FIR5	MapMan:35.1	:	:	:

Description

AT4G11770 (E=1e-022) | kelch repeat-containing F-box family protein

Coordinates

chrScaffold000362:-:3173..3445

Molecular Weight (calculated)

10264.8 Da

IEP (calculated)

9.256

GRAVY (calculated)

0.133

Length

90 amino acids

Sequence
(BLAST)

1: MWRDLKGLEG LPKLPKSFSR LRLVNYDGKI AVLWEKSGGV SFMEKKMIWC AVIAVERRSG QEIYGKIEWC DVVLTVPKSY CVLESIAVTI

Best Arabidopsis Sequence Match ( AT4G11770.1 )
(BLAST)

001: MMNGIKSSPC NMPYLPDDLL LNILGRVSRL YYPILSLVSK RFRSLVGSLE LYKIRTLLGR RTENCLYLSL RFSYGSNPRW FTLCRRPTRT PSPEPNLKSR
101: WFTSCFRPIL TNLTRATSKE EKKLSENLMV SIPTSNDCPL SGLTCNTIGS YIYMIGGYIN GVLSSRVFFL DCRSHTWHEA PSMQVARKSP LVNVLDGKIY
201: VVEGWRGSDY SNLIEIFDPK TQKWEHVPSP SAEMRGRYIS KGLVYEEKLY LFGDKNVVYK PKESRWDALG FDMNLWLVSY GSSCVIDNVC YMVFYKRLIW
301: YDSEVRYWRV LKGLEKLPKL RHRRSCIRMV DYGGKIAILW EKKVRVVGSD KKMIWCTEIA LERRSAHKIY GKIEWCDVVL TVPKSCSLLE FIAVTI

Arabidopsis Description

Putative F-box/kelch-repeat protein At4g11770 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0E4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.