Factsheet for Bra011856.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014159.1-P
Bra018756.1-P
Bra018757.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39550.1	Bra039504.1-P	AT2G03170.1	14749489
AT4G39550.1	Bra014159.1-P	AT3G60010.1	14749489
AT4G39550.1	Bra018756.1-P	AT3G60010.1	14749489
AT4G39550.1	Bra018757.1-P	AT3G60010.1	14749489

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41983	Canola	cytosol	88.48	66.27
Bra001343.1-P	Field mustard	nucleus	44.5	31.95
Bra011854.1-P	Field mustard	plastid	64.92	31.88
Bra033628.1-P	Field mustard	nucleus	57.07	27.88
AT4G39550.1	Thale cress	nucleus	56.02	27.3
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	36.65	25.45
Bra032688.1-P	Field mustard	cytosol	46.6	25.21
Bra023735.1-P	Field mustard	nucleus	49.21	25.13
Bra022509.1-P	Field mustard	cytosol	41.88	23.6
Bra036150.1-P	Field mustard	plastid	44.5	22.91
Bra030332.1-P	Field mustard	cytosol	46.6	22.76
Bra011852.1-P	Field mustard	cytosol	41.36	22.13
Bra000083.1-P	Field mustard	extracellular	39.27	21.31
Bra018362.1-P	Field mustard	cytosol	41.88	21.22
Bra011851.1-P	Field mustard	cytosol, plastid	43.98	20.24
Bra029718.1-P	Field mustard	nucleus	40.84	19.65
Bra040886.1-P	Field mustard	cytosol	39.79	19.54
Bra017635.1-P	Field mustard	plasma membrane	37.7	19.2
Bra029716.1-P	Field mustard	mitochondrion	35.08	18.98
Bra011300.1-P	Field mustard	cytosol	37.7	18.85
Bra017634.1-P	Field mustard	extracellular	18.85	16.98
Bra011853.1-P	Field mustard	cytosol	34.55	16.06
Bra002939.1-P	Field mustard	cytosol	10.99	10.99
Bra011855.1-P	Field mustard	plastid	12.04	9.24
Bra040994.1-P	Field mustard	cytosol	1.05	2.22
Bra006063.1-P	Field mustard	cytosol	0.52	0.54

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra011856	EnsemblPlants:Bra011856.1	EnsemblPlants:Bra011856.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4D5U9	PFAM:PF00646	PFAM:PF01344	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002546050
SEG:seg	:	:	:	:	:

Description

AT4G39550 (E=8e-053) | kelch repeat-containing F-box family protein

Coordinates

chrA01:-:216185..216760

Molecular Weight (calculated)

21250.4 Da

IEP (calculated)

9.715

GRAVY (calculated)

-0.517

Length

191 amino acids

Sequence
(BLAST)

001: MSPPERKRKK TKQSLVLEPT PESTPITSLP DDLVVSCLAR VSRLQYPTLS LVSKSFRSLL ASPHLYETRS SLGRTESCLY VCIRFPDETI PRWFTLCQKP
101: KKKNKRTKKA SGYVLAKLPT PPSRSAHWSG LVAVGSDIYN IGGPIDEADE PSSSVSILDC RSNTWREGPS SSVSILDCRA NTWREGPRPC D

Best Arabidopsis Sequence Match ( AT4G39550.1 )
(BLAST)

001: MSSPEKKRKT TKKPSPTPQS TTPNPSLPDD LVVSCLARVS RLYYPTLSLV SKSFRSLIAS PDLYKTRSLL GRTESCLYVC LQEKDSDPNP RWFTLCLKPN
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV

Arabidopsis Description

F-box/kelch-repeat protein At4g39550 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVA3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.