Factsheet for Bra036150.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006063.1-P	Field mustard	cytosol	31.0	62.16
Bra001343.1-P	Field mustard	nucleus	36.93	51.5
AT3G08810.1	Thale cress	nucleus	46.36	50.15
AT5G51250.1	Thale cress	cytosol	48.25	48.64
Bra023735.1-P	Field mustard	nucleus	48.79	48.4
AT2G03460.1	Thale cress	plastid	31.81	45.91
Bra011856.1-P	Field mustard	nucleus	22.91	44.5
AT3G06570.1	Thale cress	cytosol, plastid	46.63	44.36
Bra029716.1-P	Field mustard	mitochondrion	41.78	43.91
Bra033628.1-P	Field mustard	nucleus	46.09	43.73
Bra011854.1-P	Field mustard	plastid	45.55	43.44
Bra000083.1-P	Field mustard	extracellular	39.62	41.76
Bra029718.1-P	Field mustard	nucleus	44.47	41.56
Bra030332.1-P	Field mustard	cytosol	42.86	40.66
Bra040994.1-P	Field mustard	cytosol	9.7	40.0
Bra032688.1-P	Field mustard	cytosol	38.01	39.94
Bra022509.1-P	Field mustard	cytosol	35.04	38.35
Bra011855.1-P	Field mustard	plastid	25.61	38.15
Bra040886.1-P	Field mustard	cytosol	39.35	37.53
Bra017635.1-P	Field mustard	plasma membrane	36.66	36.27
Bra011853.1-P	Field mustard	cytosol	40.16	36.25
Bra018362.1-P	Field mustard	cytosol	36.66	36.07
Bra011300.1-P	Field mustard	cytosol	35.31	34.29
Bra011851.1-P	Field mustard	cytosol, plastid	38.01	33.98
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	24.53	33.09
Bra011852.1-P	Field mustard	cytosol	31.81	33.05
Bra017634.1-P	Field mustard	extracellular	17.25	30.19
Bra002939.1-P	Field mustard	cytosol	13.21	25.65

Protein Annotations

EnsemblPlants:Bra036150.1	EnsemblPlants:Bra036150.1-P	EnsemblPlantsGene:Bra036150	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	SEG:seg	SMART:SM00256	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0002541ECA	UniProt:M4F4Z6	MapMan:35.1	:	:

Description

AT4G25710 (E=1e-086) | kelch repeat-containing F-box family protein

Coordinates

chrA09:-:2468012..2469127

Molecular Weight (calculated)

42223.8 Da

IEP (calculated)

9.216

GRAVY (calculated)

-0.250

Length

371 amino acids

Sequence
(BLAST)

001: MSSREKRRKS SPSPTPPPPK SSPIPSLPYD LVLICVARIS RLYYPTLSLV SKSFRSLVSS PELYKTRSLL GFTETCLYVC LQSHRDEATW FTLCLKPGKT
101: LKTGSSGYAL ARVHVPSSPP SRFRNVVAVG SNIYNIALPR VPILDCKSHT WVEAPSLPVQ LSSLSTSVLG RKIYVAGMDS SLKNSFEVFD TETQIWDSVS
201: TKRKESFIFK EKTVSIDGKF HAVTNEEVVA YDPKEGKWEM VGGRMGWCMF SDAYCVIGNV LYSAFDGVFR WYDTEERIWS FLHGLVGLPR ITRDRVIRLA
301: DYGGKMMVVW DQAGKPSSRY KEIWCAEIAL ERRHDDDSEN EIWGKVEWFD RMLKIKINTY YQVEKVLSTT V

Best Arabidopsis Sequence Match ( AT4G25710.1 )
(BLAST)

001: MERLVSGETT TSSNMKKKKK KVSSTTNPSL PDDLVLVIIA RVSILYYPIL SLVSKSFRSL LASPELYKVR SLLGRRESRL YVCINMYSYK NGPSWFTLCR
101: KPDRTTTSSN KEEDRSSGYV LARIPIPHSP LTQRYSLAAV GSNIYNIGVT RYHHLTSSSV WVLDCRSHTW RQAPSLPVEL FRVSVSVLDQ KIYVAGLHQE
201: DGSDSLKNSV TVLDTETQVS DRVAIPCSVS QGKEIFISTS VGGKVNLVTG RKVVDYNPVE GSWEEVGDTM CEFMFSKCFC VVGNVLYSCA IDRVFRWYDT
301: EVRTWRNLEC LIGGRLPKLS PRAFVSLADY GGKLAVFWNQ GVGDWQMLWC AVIALERRNT CEILGNVEWS DHVLHVPKIR SYYNALSATL

Arabidopsis Description

F-box/kelch-repeat protein At4g25710 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.