Factsheet for Bra011852.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011851.1-P	Field mustard	cytosol, plastid	61.62	53.01
AT1G61540.1	Thale cress	cytosol	47.62	42.29
Bra011856.1-P	Field mustard	nucleus	22.13	41.36
Bra011854.1-P	Field mustard	plastid	40.9	37.53
Bra011855.1-P	Field mustard	plastid	25.77	36.95
Bra001343.1-P	Field mustard	nucleus	27.45	36.84
Bra032688.1-P	Field mustard	cytosol	36.13	36.54
Bra011853.1-P	Field mustard	cytosol	41.18	35.77
Bra033628.1-P	Field mustard	nucleus	38.66	35.29
Bra023735.1-P	Field mustard	nucleus	35.85	34.22
Bra011300.1-P	Field mustard	cytosol	36.41	34.03
CDY41987	Canola	plastid	66.39	33.15
Bra022509.1-P	Field mustard	cytosol	30.81	32.45
Bra036150.1-P	Field mustard	plastid	33.05	31.81
CDY42635	Canola	nucleus	65.83	31.42
Bra017635.1-P	Field mustard	plasma membrane	32.77	31.2
Bra040886.1-P	Field mustard	cytosol	33.61	30.85
Bra030332.1-P	Field mustard	cytosol	33.61	30.69
Bra000083.1-P	Field mustard	extracellular	29.69	30.11
Bra040994.1-P	Field mustard	cytosol	7.56	30.0
Bra018362.1-P	Field mustard	cytosol	31.65	29.97
Bra029718.1-P	Field mustard	nucleus	32.21	28.97
Bra029716.1-P	Field mustard	mitochondrion	28.57	28.9
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	22.13	28.73
Bra017634.1-P	Field mustard	extracellular	16.25	27.36
Bra006063.1-P	Field mustard	cytosol	12.89	24.86
Bra002939.1-P	Field mustard	cytosol	10.36	19.37

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra011852	EnsemblPlants:Bra011852.1	EnsemblPlants:Bra011852.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4D5U5	PFAM:PF00646	PFAM:PF01344	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002546054
SEG:seg	:	:	:	:	:

Description

AT1G61540 (E=2e-057) | kelch repeat-containing F-box family protein

Coordinates

chrA01:-:225534..226607

Molecular Weight (calculated)

41099.8 Da

IEP (calculated)

8.362

GRAVY (calculated)

-0.453

Length

357 amino acids

Sequence
(BLAST)

001: MSSKSRSSAA TSRKDLPHDK KMPETEPMSI SFSSLPDDLL INCLARVSRL YYPALSCVSK NFRSIIASPE IYQTRASLNR TEKCVYLYLS FCRDPETYWF
101: TMRRRPSRNI ANESSGYYME MAPSPKYLHP AQSSTLVAVG SDVYKIGGGD HSTCKLSKRK CSYSFSVLDC RTHMWRQAPS MWVERDSSST ATFFDGKIYV
201: AGGCDKRYVG YPDRVEAFDL EKQTWGFVTN PRVFDWYHKY KAARECHCVI DDVLFFWESG AFKWYDSKTR LCKEVSDVKG LPDLHDPKFC KMAMVDLGGK
301: MGLLWNTKTS QECKIWCAEI TFERRHGDEM WGKVEWFDYV LSTHESCSSF YAVSASV

Best Arabidopsis Sequence Match ( AT1G61540.1 )
(BLAST)

001: MNGEKPLRER KKKMPYPSPV TEEPISIMSL PYDLLLNCFS LVSRLYYPTL SLVSKTFRSI ITSRELYEIR SRLNRTDKCL YLCFPYDMNT HWFTLCREPN
101: RNVAENSSGY LLVQVPSPNG LLPVHSSSVI AVGSNIYKIG GTKSYRHKLW KRTRYSSSVS VLDCRSHRWR QAPGMRVARG CSSTVCEVDG KIYIAGGCKE
201: DIGSLYWIEV FDPKTQTWGT LKNPCIEYQH DIGYRCEVKS LGLDGKIYMF GSEFVVYNFE EDRWKCIGRD KYNLYHAVDP MSRINSSSCV VDNVLFILDK
301: GTRVFKWYDF KVSLWKELNG VEGLPDLSDR GYVKMVDLGG KIAVLWQECL TNKKIKRIWC AEISLERRDR DEIWGKVEWF DIVLSVHSSF SLLCADTISV
401: VV

Arabidopsis Description

Putative F-box/kelch-repeat protein At1g61540 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.