Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G39590.1 | Thale cress | plastid | 53.23 | 53.23 |
| Bra011851.1-P | Field mustard | cytosol, plastid | 49.5 | 47.95 |
| Bra011852.1-P | Field mustard | cytosol | 42.29 | 47.62 |
| AT4G39560.1 | Thale cress | plastid | 29.6 | 44.74 |
| AT4G39550.1 | Thale cress | nucleus | 42.29 | 43.37 |
| AT4G39580.1 | Thale cress | cytosol | 40.3 | 43.2 |
| AT5G51250.1 | Thale cress | cytosol | 38.56 | 42.12 |
| AT5G49000.2 | Thale cress | nucleus | 38.81 | 41.94 |
| AT1G77880.1 | Thale cress | cytosol | 13.43 | 41.54 |
| AT5G38680.1 | Thale cress | cytosol | 36.57 | 41.18 |
| AT4G39600.2 | Thale cress | plastid | 38.31 | 40.74 |
| AT4G39570.1 | Thale cress | nucleus, plastid | 39.8 | 40.51 |
| AT4G34170.1 | Thale cress | cytosol | 29.35 | 40.27 |
| AT1G19930.1 | Thale cress | cytosol | 34.33 | 40.12 |
| AT5G38670.1 | Thale cress | cytosol, plastid | 28.86 | 39.86 |
| AT4G05620.1 | Thale cress | plastid | 12.94 | 39.39 |
| AT3G08810.1 | Thale cress | nucleus | 33.33 | 39.07 |
| AT4G11770.1 | Thale cress | cytosol | 38.31 | 38.89 |
| AT4G11750.1 | Thale cress | cytosol | 37.06 | 38.6 |
| AT4G23580.1 | Thale cress | cytosol | 35.82 | 37.6 |
| AT4G39290.1 | Thale cress | cytosol | 34.08 | 37.53 |
| AT3G43710.1 | Thale cress | cytosol | 35.07 | 37.3 |
| AT4G25710.1 | Thale cress | cytosol | 36.07 | 37.18 |
| AT4G11745.1 | Thale cress | cytosol | 26.12 | 36.97 |
| AT4G33900.1 | Thale cress | cytosol | 34.58 | 36.68 |
| AT1G60570.1 | Thale cress | cytosol | 34.58 | 36.48 |
| AT5G48990.1 | Thale cress | cytosol, plastid | 33.08 | 35.75 |
| AT2G03460.1 | Thale cress | plastid | 22.64 | 35.41 |
| AT3G06570.1 | Thale cress | cytosol, plastid | 33.83 | 34.87 |
| AT3G09750.1 | Thale cress | mitochondrion | 13.68 | 34.16 |
| AT5G48980.1 | Thale cress | nucleus | 33.58 | 33.83 |
| AT2G20380.1 | Thale cress | cytosol | 26.12 | 30.17 |
| CDY41987 | Canola | plastid | 42.54 | 23.92 |
| CDY42635 | Canola | nucleus | 41.54 | 22.33 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:842448 | ProteinID:AAD25554.1 | ProteinID:AEE33849.1 | ArrayExpress:AT1G61540 |
| EnsemblPlantsGene:AT1G61540 | RefSeq:AT1G61540 | TAIR:AT1G61540 | RefSeq:AT1G61540-TAIR-G | EnsemblPlants:AT1G61540.1 | TAIR:AT1G61540.1 |
| Unigene:At.66071 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_176348.1 | PFAM:PF00646 |
| PFAM:PF01344 | PFscan:PS50181 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | UniProt:Q9SY96 | SMART:SM00256 |
| SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI00000A533F | : | : | : |
Description
Putative F-box/kelch-repeat protein At1g61540 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY96]
Coordinates
chr1:+:22702498..22703706
Molecular Weight (calculated)
46399.0 Da
IEP (calculated)
8.723
GRAVY (calculated)
-0.254
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGEKPLRER KKKMPYPSPV TEEPISIMSL PYDLLLNCFS LVSRLYYPTL SLVSKTFRSI ITSRELYEIR SRLNRTDKCL YLCFPYDMNT HWFTLCREPN
101: RNVAENSSGY LLVQVPSPNG LLPVHSSSVI AVGSNIYKIG GTKSYRHKLW KRTRYSSSVS VLDCRSHRWR QAPGMRVARG CSSTVCEVDG KIYIAGGCKE
201: DIGSLYWIEV FDPKTQTWGT LKNPCIEYQH DIGYRCEVKS LGLDGKIYMF GSEFVVYNFE EDRWKCIGRD KYNLYHAVDP MSRINSSSCV VDNVLFILDK
301: GTRVFKWYDF KVSLWKELNG VEGLPDLSDR GYVKMVDLGG KIAVLWQECL TNKKIKRIWC AEISLERRDR DEIWGKVEWF DIVLSVHSSF SLLCADTISV
401: VV
101: RNVAENSSGY LLVQVPSPNG LLPVHSSSVI AVGSNIYKIG GTKSYRHKLW KRTRYSSSVS VLDCRSHRWR QAPGMRVARG CSSTVCEVDG KIYIAGGCKE
201: DIGSLYWIEV FDPKTQTWGT LKNPCIEYQH DIGYRCEVKS LGLDGKIYMF GSEFVVYNFE EDRWKCIGRD KYNLYHAVDP MSRINSSSCV VDNVLFILDK
301: GTRVFKWYDF KVSLWKELNG VEGLPDLSDR GYVKMVDLGG KIAVLWQECL TNKKIKRIWC AEISLERRDR DEIWGKVEWF DIVLSVHSSF SLLCADTISV
401: VV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.