Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G05620.1 | Thale cress | plastid | 21.43 | 43.18 |
| AT3G09750.1 | Thale cress | mitochondrion | 24.81 | 40.99 |
| AT5G49000.2 | Thale cress | nucleus | 54.14 | 38.71 |
| AT4G39550.1 | Thale cress | nucleus | 56.39 | 38.27 |
| AT5G38680.1 | Thale cress | cytosol | 48.12 | 35.85 |
| AT4G39580.1 | Thale cress | cytosol | 47.37 | 33.6 |
| AT1G19930.1 | Thale cress | cytosol | 43.23 | 33.43 |
| AT4G39570.1 | Thale cress | nucleus, plastid | 49.25 | 33.16 |
| AT1G77880.1 | Thale cress | cytosol | 16.17 | 33.08 |
| AT5G51250.1 | Thale cress | cytosol | 45.11 | 32.61 |
| AT4G34170.1 | Thale cress | cytosol | 35.71 | 32.42 |
| AT4G11770.1 | Thale cress | cytosol | 46.62 | 31.31 |
| AT4G39600.2 | Thale cress | plastid | 43.98 | 30.95 |
| AT1G60570.1 | Thale cress | cytosol | 43.61 | 30.45 |
| AT4G39590.1 | Thale cress | plastid | 45.86 | 30.35 |
| AT3G08810.1 | Thale cress | nucleus | 39.1 | 30.32 |
| AT4G25710.1 | Thale cress | cytosol | 43.98 | 30.0 |
| AT1G61540.1 | Thale cress | cytosol | 44.74 | 29.6 |
| AT3G43710.1 | Thale cress | cytosol | 41.73 | 29.37 |
| AT3G06570.1 | Thale cress | cytosol, plastid | 42.86 | 29.23 |
| AT5G38670.1 | Thale cress | cytosol, plastid | 31.58 | 28.87 |
| AT4G39290.1 | Thale cress | cytosol | 38.72 | 28.22 |
| AT5G48990.1 | Thale cress | cytosol, plastid | 39.1 | 27.96 |
| AT4G33900.1 | Thale cress | cytosol | 39.47 | 27.7 |
| AT4G23580.1 | Thale cress | cytosol | 39.85 | 27.68 |
| AT4G11750.1 | Thale cress | cytosol | 39.1 | 26.94 |
| AT5G48980.1 | Thale cress | nucleus | 36.84 | 24.56 |
| AT2G20380.1 | Thale cress | cytosol | 29.7 | 22.7 |
| AT2G03460.1 | Thale cress | plastid | 19.17 | 19.84 |
| AT4G11745.1 | Thale cress | cytosol | 19.92 | 18.66 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:830110 | UniProt:A0A178V3F4 | ProteinID:AEE87087.1 | ProteinID:AEE87088.1 |
| EMBL:AK176780 | ArrayExpress:AT4G39560 | EnsemblPlantsGene:AT4G39560 | RefSeq:AT4G39560 | TAIR:AT4G39560 | RefSeq:AT4G39560-TAIR-G |
| EnsemblPlants:AT4G39560.1 | TAIR:AT4G39560.1 | Unigene:At.43033 | EMBL:BT029469 | ProteinID:CAB44691.1 | ProteinID:CAB80619.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_195666.2 | RefSeq:NP_974716.1 | ProteinID:OAP00416.1 |
| PFAM:PF00646 | PFAM:PF01344 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50181 | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF23 | UniProt:Q67XN8 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| UniParc:UPI000034F1A7 | : | : | : | : | : |
Description
F-box/kelch-repeat protein At4g39560 [Source:UniProtKB/Swiss-Prot;Acc:Q67XN8]
Coordinates
chr4:-:18382259..18383885
Molecular Weight (calculated)
29491.7 Da
IEP (calculated)
8.652
GRAVY (calculated)
-0.021
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPVKKMKK KTTTSPILSP TPHSTQILSL PVDLLISILA RVSRLDYPIL SLVSKSFRSL IASPELYETR SLLGRTESCL YLCLGIPSDF NPRWFTLCRK
101: PKPSGHVMAA ISIPNSRPVH CSGLVAVGSD IYNIGGSIIN EHSSSVSILD CRYHTWRDAP NMLVERNSHA ANVIDGKIYV AGGSRDSNSS NWMEVFDIKT
201: QTWEPVLNPI ADGCDRRIRK SAVIEEAICL FGYKGVGVAY NPRIDKWEAI GEVNYLDLGW VWLLVA
101: PKPSGHVMAA ISIPNSRPVH CSGLVAVGSD IYNIGGSIIN EHSSSVSILD CRYHTWRDAP NMLVERNSHA ANVIDGKIYV AGGSRDSNSS NWMEVFDIKT
201: QTWEPVLNPI ADGCDRRIRK SAVIEEAICL FGYKGVGVAY NPRIDKWEAI GEVNYLDLGW VWLLVA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.