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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • cytosol 1
  • mitochondrion 2
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G51250.1 Thale cress cytosol 53.35 49.73
CDX78384 Canola cytosol 20.41 48.61
Bra036150.1-P Field mustard plastid 50.15 46.36
AT1G19930.1 Thale cress cytosol 45.77 45.64
AT5G38680.1 Thale cress cytosol 47.23 45.38
AT3G06570.1 Thale cress cytosol, plastid 51.02 44.87
AT5G38670.1 Thale cress cytosol, plastid 37.9 44.67
CDY16283 Canola cytosol 18.95 44.52
AT4G25710.1 Thale cress cytosol 50.15 44.1
CDY07711 Canola extracellular 44.31 43.18
Bra000083.1-P Field mustard extracellular 44.31 43.18
AT4G05620.1 Thale cress plastid 16.33 42.42
AT3G09750.1 Thale cress mitochondrion 19.83 42.24
AT4G39550.1 Thale cress nucleus 47.81 41.84
AT5G49000.2 Thale cress nucleus 44.61 41.13
Bra029716.1-P Field mustard mitochondrion 42.27 41.08
AT2G03460.1 Thale cress plastid 30.61 40.86
Bra006063.1-P Field mustard cytosol 21.28 39.46
AT4G39580.1 Thale cress cytosol 42.86 39.2
AT4G39560.1 Thale cress plastid 30.32 39.1
AT4G39570.1 Thale cress nucleus, plastid 44.9 38.99
Bra029718.1-P Field mustard nucleus 44.9 38.79
AT1G77880.1 Thale cress cytosol 14.58 38.46
AT5G48990.1 Thale cress cytosol, plastid 41.69 38.44
CDY29974 Canola plasma membrane 36.44 37.88
AT4G39600.2 Thale cress plastid 40.52 36.77
AT1G60570.1 Thale cress cytosol 40.82 36.75
CDY62432 Canola golgi 46.06 36.16
AT4G11770.1 Thale cress cytosol 39.94 34.6
CDY36006 Canola cytosol 22.16 34.39
CDY27975 Canola nucleus, plastid 33.24 34.34
AT4G39590.1 Thale cress plastid 39.94 34.08
AT5G48980.1 Thale cress nucleus 39.36 33.83
AT1G61540.1 Thale cress cytosol 39.07 33.33
AT4G34170.1 Thale cress cytosol 27.99 32.76
AT2G20380.1 Thale cress cytosol 33.24 32.76
AT3G43710.1 Thale cress cytosol 35.86 32.54
AT4G23580.1 Thale cress cytosol 34.69 31.07
AT4G39290.1 Thale cress cytosol 32.65 30.68
AT4G33900.1 Thale cress cytosol 33.82 30.61
AT4G11750.1 Thale cress cytosol 34.11 30.31
AT4G11745.1 Thale cress cytosol 21.28 25.7
CDX81183 Canola cytosol 17.2 24.89
Protein Annotations
Gene3D:2.120.10.80MapMan:35.1EntrezGene:820028UniProt:A0A178VNR3ProteinID:AAF07840.1ProteinID:AAG51346.1
ProteinID:AEE74682.1ArrayExpress:AT3G08810EnsemblPlantsGene:AT3G08810RefSeq:AT3G08810TAIR:AT3G08810RefSeq:AT3G08810-TAIR-G
EnsemblPlants:AT3G08810.1TAIR:AT3G08810.1InterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:IPR001810InterPro:IPR015915InterPro:Kelch-typ_b-propellerInterPro:Kelch_2RefSeq:NP_187493.1
ProteinID:OAP06492.1PFAM:PF00646PFAM:PF07646PO:PO:0000037PO:PO:0000084PO:PO:0001016
PO:PO:0001017PO:PO:0001078PO:PO:0004507PO:PO:0007098PO:PO:0007611PO:PO:0007616
PO:PO:0009005PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025195PO:PO:0025281PANTHER:PTHR24414PANTHER:PTHR24414:SF23UniProt:Q9C9X9SMART:SM00256
SUPFAM:SSF117281SUPFAM:SSF81383UniParc:UPI00000A16CCSEG:seg::
Description
F-box/kelch-repeat protein At3g08810 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9X9]
Coordinates
chr3:-:2675470..2676708
Molecular Weight (calculated)
38494.7 Da
IEP (calculated)
9.247
GRAVY (calculated)
-0.277
Length
343 amino acids
Sequence
(BLAST)
001: MSYPERKRKR SRWSKPHSTQ NPSPSLPDDV LLSIFARVSR LYYPTLSHVS ESFRSLLASP ELYKARSLSG NTEICLYVCL RCSTGYRWFS LSRKPDQTLT
101: YEERKSSGYA LARVPIPGGS PNVRSSSLVA VGSDIYNICG SINKASSSSS VSILDCQSHT WREAPSLPVE LSSISASVRD GNQGGHGYSD SRKNSFKVFA
201: YNSKEGRWDH LVGLGAGSFM LPDSYCVIDN VSYSVSDGMF RWYDTEVRRW KDLRGLFQLP KFSAGACVIL ADYGGKMAVL WDQLPYHHGF HKTIQCAVIA
301: LERRTSFVFR EKSCQIWGKV EWVDDLLTVP TSYDLVKVLV ATL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.