Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033628.1-P | Field mustard | nucleus | 60.46 | 60.61 |
| CDY53173 | Canola | nucleus, plastid | 56.89 | 60.11 |
| CDY41983 | Canola | cytosol | 39.03 | 60.0 |
| CDY41985 | Canola | plastid | 39.8 | 58.65 |
| CDY42633 | Canola | plastid | 40.31 | 57.45 |
| Bra011854.1-P | Field mustard | plastid | 56.38 | 56.81 |
| AT5G49000.2 | Thale cress | nucleus | 53.83 | 56.72 |
| AT4G39560.1 | Thale cress | plastid | 38.27 | 56.39 |
| Bra011856.1-P | Field mustard | nucleus | 27.3 | 56.02 |
| AT1G19930.1 | Thale cress | cytosol | 46.94 | 53.49 |
| AT4G39580.1 | Thale cress | cytosol | 50.26 | 52.53 |
| AT5G51250.1 | Thale cress | cytosol | 48.98 | 52.17 |
| AT5G38670.1 | Thale cress | cytosol, plastid | 38.52 | 51.89 |
| AT4G39570.1 | Thale cress | nucleus, plastid | 51.28 | 50.89 |
| AT4G05620.1 | Thale cress | plastid | 16.58 | 49.24 |
| CDY42631 | Canola | nucleus | 35.97 | 49.13 |
| AT4G39600.2 | Thale cress | plastid | 47.19 | 48.94 |
| AT3G08810.1 | Thale cress | nucleus | 41.84 | 47.81 |
| AT5G38680.1 | Thale cress | cytosol | 43.37 | 47.62 |
| AT5G48990.1 | Thale cress | cytosol, plastid | 43.88 | 46.24 |
| AT1G60570.1 | Thale cress | cytosol | 44.9 | 46.19 |
| AT4G25710.1 | Thale cress | cytosol | 44.9 | 45.13 |
| AT4G34170.1 | Thale cress | cytosol | 33.16 | 44.37 |
| AT4G11770.1 | Thale cress | cytosol | 43.88 | 43.43 |
| AT1G77880.1 | Thale cress | cytosol | 14.29 | 43.08 |
| AT4G39590.1 | Thale cress | plastid | 43.37 | 42.29 |
| AT1G61540.1 | Thale cress | cytosol | 43.37 | 42.29 |
| AT3G09750.1 | Thale cress | mitochondrion | 17.35 | 42.24 |
| AT4G11750.1 | Thale cress | cytosol | 41.58 | 42.23 |
| AT5G48980.1 | Thale cress | nucleus | 42.09 | 41.35 |
| AT3G06570.1 | Thale cress | cytosol, plastid | 41.07 | 41.28 |
| AT4G23580.1 | Thale cress | cytosol | 40.31 | 41.25 |
| AT3G43710.1 | Thale cress | cytosol | 39.29 | 40.74 |
| AT2G03460.1 | Thale cress | plastid | 26.53 | 40.47 |
| AT4G33900.1 | Thale cress | cytosol | 38.78 | 40.11 |
| AT4G39290.1 | Thale cress | cytosol | 36.73 | 39.45 |
| AT2G20380.1 | Thale cress | cytosol | 33.67 | 37.93 |
| AT4G11745.1 | Thale cress | cytosol | 27.04 | 37.32 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:830109 | ProteinID:AEE87086.1 | EMBL:AK228125 | ArrayExpress:AT4G39550 |
| EnsemblPlantsGene:AT4G39550 | RefSeq:AT4G39550 | TAIR:AT4G39550 | RefSeq:AT4G39550-TAIR-G | EnsemblPlants:AT4G39550.1 | TAIR:AT4G39550.1 |
| Unigene:At.31086 | EMBL:BT003146 | ProteinID:CAB44690.1 | ProteinID:CAB80618.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller |
| InterPro:Kelch_1 | RefSeq:NP_195665.1 | PFAM:PF00646 | PFAM:PF01344 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | UniProt:Q9SVA3 | SMART:SM00256 |
| SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI000000BF0F | SEG:seg | : |
Description
F-box/kelch-repeat protein At4g39550 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVA3]
Coordinates
chr4:-:18380482..18381945
Molecular Weight (calculated)
44271.4 Da
IEP (calculated)
9.533
GRAVY (calculated)
-0.368
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPEKKRKT TKKPSPTPQS TTPNPSLPDD LVVSCLARVS RLYYPTLSLV SKSFRSLIAS PDLYKTRSLL GRTESCLYVC LQEKDSDPNP RWFTLCLKPN
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.