Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G03460.1 | Thale cress | plastid | 38.49 | 43.58 |
| AT5G51250.1 | Thale cress | cytosol | 52.58 | 41.58 |
| AT5G38680.1 | Thale cress | cytosol | 49.83 | 40.62 |
| AT1G77880.1 | Thale cress | cytosol | 17.87 | 40.0 |
| AT3G06570.1 | Thale cress | cytosol, plastid | 51.89 | 38.72 |
| AT4G39550.1 | Thale cress | nucleus | 51.89 | 38.52 |
| AT3G08810.1 | Thale cress | nucleus | 44.67 | 37.9 |
| AT4G39580.1 | Thale cress | cytosol | 47.77 | 37.07 |
| AT5G49000.2 | Thale cress | nucleus | 46.39 | 36.29 |
| AT4G39600.2 | Thale cress | plastid | 45.02 | 34.66 |
| AT4G05620.1 | Thale cress | plastid | 15.46 | 34.09 |
| AT4G25710.1 | Thale cress | cytosol | 45.36 | 33.85 |
| AT3G09750.1 | Thale cress | mitochondrion | 18.56 | 33.54 |
| AT4G34170.1 | Thale cress | cytosol | 33.68 | 33.45 |
| AT1G19930.1 | Thale cress | cytosol | 39.52 | 33.43 |
| AT4G39570.1 | Thale cress | nucleus, plastid | 43.99 | 32.41 |
| AT4G11770.1 | Thale cress | cytosol | 43.3 | 31.82 |
| AT4G11750.1 | Thale cress | cytosol | 41.92 | 31.61 |
| AT4G39560.1 | Thale cress | plastid | 28.87 | 31.58 |
| AT5G48990.1 | Thale cress | cytosol, plastid | 40.21 | 31.45 |
| AT3G43710.1 | Thale cress | cytosol | 39.86 | 30.69 |
| AT4G23580.1 | Thale cress | cytosol | 39.86 | 30.29 |
| AT4G39290.1 | Thale cress | cytosol | 37.46 | 29.86 |
| AT4G39590.1 | Thale cress | plastid | 41.24 | 29.85 |
| AT1G60570.1 | Thale cress | cytosol | 38.14 | 29.13 |
| AT4G33900.1 | Thale cress | cytosol | 37.8 | 29.02 |
| AT1G61540.1 | Thale cress | cytosol | 39.86 | 28.86 |
| AT4G11745.1 | Thale cress | cytosol | 27.84 | 28.52 |
| AT5G48980.1 | Thale cress | nucleus | 38.83 | 28.32 |
| AT2G20380.1 | Thale cress | cytosol | 32.65 | 27.3 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:833857 | UniProt:A0A178UKQ4 | ProteinID:AED94348.1 | ArrayExpress:AT5G38670 |
| EnsemblPlantsGene:AT5G38670 | RefSeq:AT5G38670 | TAIR:AT5G38670 | RefSeq:AT5G38670-TAIR-G | EnsemblPlants:AT5G38670.1 | TAIR:AT5G38670.1 |
| Unigene:At.55224 | ProteinID:BAB10157.1 | EMBL:DQ447012 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_2 | RefSeq:NP_198683.1 | ProteinID:OAO93877.1 |
| PFAM:PF00646 | PFAM:PF07646 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | UniProt:Q9FFV5 | SMART:SM00256 |
| SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI00000A12C5 | : | : | : |
Description
F-box/kelch-repeat protein At5g38670 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFV5]
Coordinates
chr5:+:15475786..15476871
Molecular Weight (calculated)
33833.7 Da
IEP (calculated)
8.239
GRAVY (calculated)
-0.290
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSQTNPNPS LPDDLILSCV ARVSRLYYPA LSLVSKSFRS LIASPELYKT RSLLDRTESC LYILYCTSNT WHEGPRLRVK LMSCTACVLD EKIYVSGRCK
101: DGDSMTFQVF DTNTQTWDPL SVPCSETKHD FHYKIVRFDG KLHLVSYKGV DAYNSKEGRW DLVTPSIEHN KYLYDCYRNI GNVWYTIVKG DISTSVWWYH
201: SEEREWRDLK GMVGLPKFPI DACLRMVDYG GKMAVLWDDY LPGRRKKMIW CAEIALERRG SLEIWGKVEW FAHVLTVPRQ YEFVKVLAAT L
101: DGDSMTFQVF DTNTQTWDPL SVPCSETKHD FHYKIVRFDG KLHLVSYKGV DAYNSKEGRW DLVTPSIEHN KYLYDCYRNI GNVWYTIVKG DISTSVWWYH
201: SEEREWRDLK GMVGLPKFPI DACLRMVDYG GKMAVLWDDY LPGRRKKMIW CAEIALERRG SLEIWGKVEW FAHVLTVPRQ YEFVKVLAAT L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.