Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AT1G61540.1 | Thale cress | cytosol | 53.23 | 53.23 |
Bra011855.1-P | Field mustard | plastid | 31.84 | 51.41 |
CDY41984 | Canola | cytosol | 46.52 | 48.83 |
CDY42632 | Canola | cytosol | 45.27 | 47.52 |
AT4G39560.1 | Thale cress | plastid | 30.35 | 45.86 |
CDY42634 | Canola | cytosol, nucleus, plastid | 47.51 | 45.8 |
Bra011853.1-P | Field mustard | cytosol | 46.27 | 45.26 |
CDY41986 | Canola | cytosol | 46.27 | 45.15 |
AT5G49000.2 | Thale cress | nucleus | 41.54 | 44.89 |
AT4G39550.1 | Thale cress | nucleus | 42.29 | 43.37 |
AT1G19930.1 | Thale cress | cytosol | 36.32 | 42.44 |
AT4G39580.1 | Thale cress | cytosol | 39.05 | 41.87 |
AT5G51250.1 | Thale cress | cytosol | 38.31 | 41.85 |
AT5G38670.1 | Thale cress | cytosol, plastid | 29.85 | 41.24 |
AT4G39600.2 | Thale cress | plastid | 38.06 | 40.48 |
AT5G38680.1 | Thale cress | cytosol | 35.82 | 40.34 |
AT1G77880.1 | Thale cress | cytosol | 12.94 | 40.0 |
AT3G08810.1 | Thale cress | nucleus | 34.08 | 39.94 |
AT5G48990.1 | Thale cress | cytosol, plastid | 36.82 | 39.78 |
AT4G39570.1 | Thale cress | nucleus, plastid | 39.05 | 39.75 |
AT4G34170.1 | Thale cress | cytosol | 28.36 | 38.91 |
AT4G11770.1 | Thale cress | cytosol | 38.06 | 38.64 |
AT1G60570.1 | Thale cress | cytosol | 36.32 | 38.32 |
AT4G25710.1 | Thale cress | cytosol | 37.06 | 38.21 |
AT4G05620.1 | Thale cress | plastid | 12.44 | 37.88 |
AT3G43710.1 | Thale cress | cytosol | 35.32 | 37.57 |
AT4G23580.1 | Thale cress | cytosol | 35.57 | 37.34 |
AT4G11750.1 | Thale cress | cytosol | 35.82 | 37.31 |
AT4G33900.1 | Thale cress | cytosol | 34.83 | 36.94 |
AT4G11745.1 | Thale cress | cytosol | 25.87 | 36.62 |
AT2G03460.1 | Thale cress | plastid | 22.89 | 35.8 |
AT4G39290.1 | Thale cress | cytosol | 31.34 | 34.52 |
AT5G48980.1 | Thale cress | nucleus | 33.83 | 34.09 |
AT3G06570.1 | Thale cress | cytosol, plastid | 31.84 | 32.82 |
AT2G20380.1 | Thale cress | cytosol | 27.86 | 32.18 |
AT3G09750.1 | Thale cress | mitochondrion | 11.94 | 29.81 |
Protein Annotations
Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:830113 | ProteinID:AEE87091.1 | ArrayExpress:AT4G39590 | EnsemblPlantsGene:AT4G39590 |
RefSeq:AT4G39590 | TAIR:AT4G39590 | RefSeq:AT4G39590-TAIR-G | EnsemblPlants:AT4G39590.1 | TAIR:AT4G39590.1 | EMBL:AY084368 |
Unigene:At.31083 | ProteinID:CAB44694.1 | ProteinID:CAB80622.1 | EMBL:DQ446908 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller |
InterPro:Kelch_1 | RefSeq:NP_568062.1 | PFAM:PF00646 | PFAM:PF01344 | PO:PO:0000036 | PO:PO:0000054 |
PO:PO:0000084 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007611 | PO:PO:0009031 | PO:PO:0009046 |
PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50181 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | UniProt:Q1PE10 |
SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0000162BC5 | SEG:seg |
Description
F-box/kelch-repeat protein At4g39590 [Source:UniProtKB/Swiss-Prot;Acc:Q1PE10]
Coordinates
chr4:-:18387331..18388759
Molecular Weight (calculated)
45746.0 Da
IEP (calculated)
7.616
GRAVY (calculated)
-0.460
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPMSSTSRS SAANNRKDPP RKKNKETPSP VTREPTSIDS LPNDLLLNCF ARVSRMYYPA LSRVSKRFRS IVTSPEIYNT RSLLNRTEKC LYLCLRFPFD
101: NNTHWFTLYQ NPNRTVSDKV FLQIPSPQYP LTLSSNLVAV GSNIYRIGGT VGDDSCPLGF DREPSSKVSI LDCRSHTWRD GPRMRLNRRS STTSVVDGKI
201: YVTGGTEDTD NPSHWIEVFD PKTQSWGTVT NPHIVKVWEE VCYRRAVKSI GHDGKLYLSG DKYVVYDPDE GKWNSVEEHW LIGYAIGSSN CVVDNILFYW
301: DQGVFKWYDS KVSSWKQLKG LEGLPDDFSQ REYCKLVDLG GKMAVLWDKW EYSGVCMIFC AEISLEKRDG DEIWGKVEWF DTVLEVGASC SLKSADALSA
401: SV
101: NNTHWFTLYQ NPNRTVSDKV FLQIPSPQYP LTLSSNLVAV GSNIYRIGGT VGDDSCPLGF DREPSSKVSI LDCRSHTWRD GPRMRLNRRS STTSVVDGKI
201: YVTGGTEDTD NPSHWIEVFD PKTQSWGTVT NPHIVKVWEE VCYRRAVKSI GHDGKLYLSG DKYVVYDPDE GKWNSVEEHW LIGYAIGSSN CVVDNILFYW
301: DQGVFKWYDS KVSSWKQLKG LEGLPDDFSQ REYCKLVDLG GKMAVLWDKW EYSGVCMIFC AEISLEKRDG DEIWGKVEWF DTVLEVGASC SLKSADALSA
401: SV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.