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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plastid 4
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G61540.1 Thale cress cytosol 53.23 53.23
Bra011855.1-P Field mustard plastid 31.84 51.41
CDY41984 Canola cytosol 46.52 48.83
CDY42632 Canola cytosol 45.27 47.52
AT4G39560.1 Thale cress plastid 30.35 45.86
CDY42634 Canola cytosol, nucleus, plastid 47.51 45.8
Bra011853.1-P Field mustard cytosol 46.27 45.26
CDY41986 Canola cytosol 46.27 45.15
AT5G49000.2 Thale cress nucleus 41.54 44.89
AT4G39550.1 Thale cress nucleus 42.29 43.37
AT1G19930.1 Thale cress cytosol 36.32 42.44
AT4G39580.1 Thale cress cytosol 39.05 41.87
AT5G51250.1 Thale cress cytosol 38.31 41.85
AT5G38670.1 Thale cress cytosol, plastid 29.85 41.24
AT4G39600.2 Thale cress plastid 38.06 40.48
AT5G38680.1 Thale cress cytosol 35.82 40.34
AT1G77880.1 Thale cress cytosol 12.94 40.0
AT3G08810.1 Thale cress nucleus 34.08 39.94
AT5G48990.1 Thale cress cytosol, plastid 36.82 39.78
AT4G39570.1 Thale cress nucleus, plastid 39.05 39.75
AT4G34170.1 Thale cress cytosol 28.36 38.91
AT4G11770.1 Thale cress cytosol 38.06 38.64
AT1G60570.1 Thale cress cytosol 36.32 38.32
AT4G25710.1 Thale cress cytosol 37.06 38.21
AT4G05620.1 Thale cress plastid 12.44 37.88
AT3G43710.1 Thale cress cytosol 35.32 37.57
AT4G23580.1 Thale cress cytosol 35.57 37.34
AT4G11750.1 Thale cress cytosol 35.82 37.31
AT4G33900.1 Thale cress cytosol 34.83 36.94
AT4G11745.1 Thale cress cytosol 25.87 36.62
AT2G03460.1 Thale cress plastid 22.89 35.8
AT4G39290.1 Thale cress cytosol 31.34 34.52
AT5G48980.1 Thale cress nucleus 33.83 34.09
AT3G06570.1 Thale cress cytosol, plastid 31.84 32.82
AT2G20380.1 Thale cress cytosol 27.86 32.18
AT3G09750.1 Thale cress mitochondrion 11.94 29.81
Protein Annotations
Gene3D:2.120.10.80MapMan:35.1EntrezGene:830113ProteinID:AEE87091.1ArrayExpress:AT4G39590EnsemblPlantsGene:AT4G39590
RefSeq:AT4G39590TAIR:AT4G39590RefSeq:AT4G39590-TAIR-GEnsemblPlants:AT4G39590.1TAIR:AT4G39590.1EMBL:AY084368
Unigene:At.31083ProteinID:CAB44694.1ProteinID:CAB80622.1EMBL:DQ446908InterPro:F-box-like_dom_sfInterPro:F-box_dom
GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR001810InterPro:IPR015915InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1RefSeq:NP_568062.1PFAM:PF00646PFAM:PF01344PO:PO:0000036PO:PO:0000054
PO:PO:0000084PO:PO:0001016PO:PO:0001017PO:PO:0007611PO:PO:0009031PO:PO:0009046
PO:PO:0025195PO:PO:0025281PFscan:PS50181PANTHER:PTHR24414PANTHER:PTHR24414:SF23UniProt:Q1PE10
SMART:SM00256SMART:SM00612SUPFAM:SSF117281SUPFAM:SSF81383UniParc:UPI0000162BC5SEG:seg
Description
F-box/kelch-repeat protein At4g39590 [Source:UniProtKB/Swiss-Prot;Acc:Q1PE10]
Coordinates
chr4:-:18387331..18388759
Molecular Weight (calculated)
45746.0 Da
IEP (calculated)
7.616
GRAVY (calculated)
-0.460
Length
402 amino acids
Sequence
(BLAST)
001: MFPMSSTSRS SAANNRKDPP RKKNKETPSP VTREPTSIDS LPNDLLLNCF ARVSRMYYPA LSRVSKRFRS IVTSPEIYNT RSLLNRTEKC LYLCLRFPFD
101: NNTHWFTLYQ NPNRTVSDKV FLQIPSPQYP LTLSSNLVAV GSNIYRIGGT VGDDSCPLGF DREPSSKVSI LDCRSHTWRD GPRMRLNRRS STTSVVDGKI
201: YVTGGTEDTD NPSHWIEVFD PKTQSWGTVT NPHIVKVWEE VCYRRAVKSI GHDGKLYLSG DKYVVYDPDE GKWNSVEEHW LIGYAIGSSN CVVDNILFYW
301: DQGVFKWYDS KVSSWKQLKG LEGLPDDFSQ REYCKLVDLG GKMAVLWDKW EYSGVCMIFC AEISLEKRDG DEIWGKVEWF DTVLEVGASC SLKSADALSA
401: SV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.