Factsheet for Bra011853.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41986	Canola	cytosol	96.84	96.6
Bra011855.1-P	Field mustard	plastid	40.88	67.47
AT4G39590.1	Thale cress	plastid	45.26	46.27
Bra032688.1-P	Field mustard	cytosol	35.77	41.64
Bra011854.1-P	Field mustard	plastid	39.17	41.39
Bra011852.1-P	Field mustard	cytosol	35.77	41.18
Bra033628.1-P	Field mustard	nucleus	39.17	41.18
Bra036150.1-P	Field mustard	plastid	36.25	40.16
Bra011851.1-P	Field mustard	cytosol, plastid	40.15	39.76
Bra040886.1-P	Field mustard	cytosol	37.23	39.33
Bra040994.1-P	Field mustard	cytosol	8.52	38.89
Bra001343.1-P	Field mustard	nucleus	25.06	38.72
Bra023735.1-P	Field mustard	nucleus	34.31	37.7
Bra022509.1-P	Field mustard	cytosol	30.9	37.46
Bra030332.1-P	Field mustard	cytosol	35.52	37.34
Bra017635.1-P	Field mustard	plasma membrane	32.36	35.47
Bra011300.1-P	Field mustard	cytosol	32.6	35.08
Bra018362.1-P	Field mustard	cytosol	32.12	35.01
Bra006063.1-P	Field mustard	cytosol	15.57	34.59
Bra011856.1-P	Field mustard	nucleus	16.06	34.55
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	23.11	34.55
Bra029716.1-P	Field mustard	mitochondrion	29.2	33.99
Bra029718.1-P	Field mustard	nucleus	31.63	32.75
Bra000083.1-P	Field mustard	extracellular	27.98	32.67
Bra017634.1-P	Field mustard	extracellular	16.06	31.13
Bra002939.1-P	Field mustard	cytosol	11.68	25.13

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra011853	EnsemblPlants:Bra011853.1	EnsemblPlants:Bra011853.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4D5U6	PFAM:PF00646	PFAM:PF01344	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI0002546053	SEG:seg	:	:	:	:

Description

AT1G61540 (E=8e-083) | kelch repeat-containing F-box family protein

Coordinates

chrA01:-:222823..224058

Molecular Weight (calculated)

46552.8 Da

IEP (calculated)

5.201

GRAVY (calculated)

-0.253

Length

411 amino acids

Sequence
(BLAST)

001: MSTRSSAVAN VDQPPRKKMS KQSPEISLWS LPYDLILNII ARVSRMYYPT LSLVSKKLGS VVSSPELYQT RSRLNRTESC LYLCLRYYRD HPLDPNPHWF
101: ALCMKPNRTL TDRLFIPVTS PDVRHERSTG LTSKDVSIVA VGSNIYKMGG YTPSSSEVLV LDCRFNTWHS APVMREKRSS PAASLVDGKI YVAGGCEDVN
201: SENWVEVFDP KTQTWGSVAN PGTEIRPSGA ELESFGIEGK LYLFGHNRKC VVYDPKEARW NPMIELGMGM DMDVVMGMGM DMYEAMDMEM DMTGVASAVS
301: YFHCVIGDVL FLWNEREFRW YDFNASSWKK LNGVEDLPDF DGDCKMVDVG GKMAVLWKVF GRGEERSIWC AEIALERRGD EMWGKVEWFD VVLTTHEQCG
401: LFDADILSAT V

Best Arabidopsis Sequence Match ( AT4G39590.1 )
(BLAST)

001: MFPMSSTSRS SAANNRKDPP RKKNKETPSP VTREPTSIDS LPNDLLLNCF ARVSRMYYPA LSRVSKRFRS IVTSPEIYNT RSLLNRTEKC LYLCLRFPFD
101: NNTHWFTLYQ NPNRTVSDKV FLQIPSPQYP LTLSSNLVAV GSNIYRIGGT VGDDSCPLGF DREPSSKVSI LDCRSHTWRD GPRMRLNRRS STTSVVDGKI
201: YVTGGTEDTD NPSHWIEVFD PKTQSWGTVT NPHIVKVWEE VCYRRAVKSI GHDGKLYLSG DKYVVYDPDE GKWNSVEEHW LIGYAIGSSN CVVDNILFYW
301: DQGVFKWYDS KVSSWKQLKG LEGLPDDFSQ REYCKLVDLG GKMAVLWDKW EYSGVCMIFC AEISLEKRDG DEIWGKVEWF DTVLEVGASC SLKSADALSA
401: SV

Arabidopsis Description

F-box/kelch-repeat protein At4g39590 [Source:UniProtKB/Swiss-Prot;Acc:Q1PE10]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.