Factsheet for Bra022509.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16374	Canola	cytosol, nucleus, peroxisome	94.99	95.27
CDX91543	Canola	plastid	90.86	89.8
Bra040994.1-P	Field mustard	cytosol	13.27	50.0
Bra033628.1-P	Field mustard	nucleus	50.74	43.99
Bra011854.1-P	Field mustard	plastid	50.44	43.96
Bra001343.1-P	Field mustard	nucleus	33.04	42.11
Bra011856.1-P	Field mustard	nucleus	23.6	41.88
Bra030332.1-P	Field mustard	cytosol	43.07	37.34
Bra023735.1-P	Field mustard	nucleus	39.82	36.1
Bra018362.1-P	Field mustard	cytosol	39.53	35.54
Bra036150.1-P	Field mustard	plastid	38.35	35.04
Bra040886.1-P	Field mustard	cytosol	38.94	33.93
Bra017635.1-P	Field mustard	plasma membrane	37.17	33.6
Bra032688.1-P	Field mustard	cytosol	33.92	32.58
Bra006063.1-P	Field mustard	cytosol	17.4	31.89
Bra000083.1-P	Field mustard	extracellular	32.45	31.25
Bra011300.1-P	Field mustard	cytosol	35.1	31.15
Bra011853.1-P	Field mustard	cytosol	37.46	30.9
Bra011852.1-P	Field mustard	cytosol	32.45	30.81
Bra011855.1-P	Field mustard	plastid	22.42	30.52
Bra029716.1-P	Field mustard	mitochondrion	30.97	29.75
Bra029718.1-P	Field mustard	nucleus	33.63	28.72
Bra011851.1-P	Field mustard	cytosol, plastid	35.1	28.67
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	23.01	28.36
Bra017634.1-P	Field mustard	extracellular	17.4	27.83
Bra002939.1-P	Field mustard	cytosol	10.62	18.85

Protein Annotations

EnsemblPlants:Bra022509.1	EnsemblPlants:Bra022509.1-P	EnsemblPlantsGene:Bra022509	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002545767	UniProt:M4E161	MapMan:35.1	:

Description

AT4G39550 (E=4e-039) | kelch repeat-containing F-box family protein

Coordinates

chrA02:-:9353100..9354119

Molecular Weight (calculated)

38104.5 Da

IEP (calculated)

8.385

GRAVY (calculated)

-0.312

Length

339 amino acids

Sequence
(BLAST)

001: MTSPDRKGKA TTTEQSSPLP SLPDDLLLTC FARVSTLHYP TLTLVSKRFQ SLIASPELYK IRSTLGRTES CLYVCFGSDH DPNPLWFTLC LKPDRNVINR
101: SSGNVLVPTS VSHSAPAHWS GLISGPSNDI YNIGGPLEDA PSSSEPGNMW VDPMVDVLDR KIYLTRGCNP NTRTWDPEGS TPHAFVSLVV RKKVYMFGSS
201: GDSVYKPKNG QWERFWGWKP SLGWFSCCVV EKVLYRYRSE EFKWYDTKAG HWRKLKGLKG LPKFVSYGFQ LVDYGGKLAV VWAELVPNGG DKKKVVWCAV
301: ITLERPKSGD EIWGEIEWCD VVCTVPKSYQ LEYALDATL

Best Arabidopsis Sequence Match ( AT4G39550.1 )
(BLAST)

001: MSSPEKKRKT TKKPSPTPQS TTPNPSLPDD LVVSCLARVS RLYYPTLSLV SKSFRSLIAS PDLYKTRSLL GRTESCLYVC LQEKDSDPNP RWFTLCLKPN
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV

Arabidopsis Description

F-box/kelch-repeat protein At4g39550 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVA3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.