Factsheet for Bra032688.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01110	Canola	cytosol	100.0	100.0
Bra011856.1-P	Field mustard	nucleus	25.21	46.6
Bra011854.1-P	Field mustard	plastid	49.29	44.73
Bra001343.1-P	Field mustard	nucleus	30.88	40.98
Bra033628.1-P	Field mustard	nucleus	45.04	40.66
Bra023735.1-P	Field mustard	nucleus	43.06	40.64
Bra036150.1-P	Field mustard	plastid	39.94	38.01
Bra040994.1-P	Field mustard	cytosol	9.63	37.78
Bra017635.1-P	Field mustard	plasma membrane	39.09	36.8
Bra030332.1-P	Field mustard	cytosol	40.23	36.32
Bra011852.1-P	Field mustard	cytosol	36.54	36.13
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	28.05	36.0
Bra018362.1-P	Field mustard	cytosol	38.24	35.81
Bra011853.1-P	Field mustard	cytosol	41.64	35.77
Bra040886.1-P	Field mustard	cytosol	39.09	35.48
Bra011855.1-P	Field mustard	plastid	24.93	35.34
Bra029716.1-P	Field mustard	mitochondrion	34.84	34.84
Bra011300.1-P	Field mustard	cytosol	36.83	34.03
Bra022509.1-P	Field mustard	cytosol	32.58	33.92
Bra000083.1-P	Field mustard	extracellular	33.43	33.52
Bra011851.1-P	Field mustard	cytosol, plastid	39.38	33.49
Bra029718.1-P	Field mustard	nucleus	37.39	33.25
Bra017634.1-P	Field mustard	extracellular	17.56	29.25
Bra006063.1-P	Field mustard	cytosol	13.31	25.41
Bra002939.1-P	Field mustard	cytosol	11.05	20.42

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra032688	EnsemblPlants:Bra032688.1	EnsemblPlants:Bra032688.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4EV55	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002543FFE
SEG:seg	:	:	:	:	:

Description

AT1G19930 (E=1e-067) | kelch repeat-containing F-box family protein

Coordinates

chrA04:-:5498327..5499460

Molecular Weight (calculated)

39552.1 Da

IEP (calculated)

8.934

GRAVY (calculated)

-0.233

Length

353 amino acids

Sequence
(BLAST)

001: MSSHKKKRNK KLLNSSPLFP LSTANLSLPH DLLLNCIGRL SRLYYPTLSL VCKSYRSLIA SPDLYTTRSL LNRTESCLYV CLQRSPDSNP RWFTLSRRPN
101: RTLARNKKLS DYLLVPVTSP HVTSLRSSSV AVGSDIYEIG GLINGVPSSS VSVLDCRSNS WRQAPNMQVG RSFPSANVID GKILVKGGLE LKDVNSSKWV
201: EVFDPNTQNW TTVSFTCGSK EWQSEDDNGT TRRSSSFCLI DDVSYCFDNR KLKWFDEKVG DWRFVTGLES VPKCLLGFNT SCQVHLADYG GKMVVLWDRH
301: DRSSNCQGRT IWCAVIALER CSSEEISGTV EWSEAVLKVP NSFAFVHVLA AIV

Best Arabidopsis Sequence Match ( AT5G49000.2 )
(BLAST)

001: MSSPERKRKK RSLEPSPEST PNPSLPDDLI VSILARVSRL YYPILSLVSK SSRTLVTSPE LYKTRSFFNR TESCLYVCLD FPPDPNPRWF TLYRKPNQNI
101: TEKTKNSSGF VLAPIPNHHS HSSSIVAIGS NIYAIGGSIE NAPSSKVSIL DCRSHTWHEA PSMRMKRNYP AANVVDGKIY VAGGLEEFDS SKWMEVFDIK
201: TQTWEFVLSP LAERFIYRSL VIEGEIYIFG DKVVTYKPKE DRWGGVGEHQ SMDLGLFFHS YCVIDNVLYC YRPGGIKWYE SEKRSWRKLR GLKGLSKLAS
301: SCVKLADYGG KMALLWDKYI PCSGNKSHSI SCAVVSLERC KNQGIRGKVE WFDDMLTVPS SYNFVGALAA TL

Arabidopsis Description

F-box/kelch-repeat protein At5g49000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI70]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.