Factsheet for Bra002939.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19889	Canola	cytosol	58.64	32.0
Bra040994.1-P	Field mustard	cytosol	10.47	22.22
Bra011855.1-P	Field mustard	plastid	26.18	20.08
Bra040886.1-P	Field mustard	cytosol	37.17	18.25
Bra006063.1-P	Field mustard	cytosol	16.23	16.76
Bra017634.1-P	Field mustard	extracellular	17.28	15.57
Bra011300.1-P	Field mustard	cytosol	29.84	14.92
Bra000083.1-P	Field mustard	extracellular	26.7	14.49
Bra017635.1-P	Field mustard	plasma membrane	28.27	14.4
Bra011854.1-P	Field mustard	plastid	28.8	14.14
Bra033628.1-P	Field mustard	nucleus	28.8	14.07
Bra029716.1-P	Field mustard	mitochondrion	24.61	13.31
Bra036150.1-P	Field mustard	plastid	25.65	13.21
Bra023735.1-P	Field mustard	nucleus	25.13	12.83
Bra011851.1-P	Field mustard	cytosol, plastid	26.7	12.29
Bra018362.1-P	Field mustard	cytosol	24.08	12.2
Bra001343.1-P	Field mustard	nucleus	16.75	12.03
Bra029718.1-P	Field mustard	nucleus	24.61	11.84
Bra011853.1-P	Field mustard	cytosol	25.13	11.68
Bra032688.1-P	Field mustard	cytosol	20.42	11.05
Bra011856.1-P	Field mustard	nucleus	10.99	10.99
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	15.71	10.91
Bra030332.1-P	Field mustard	cytosol	21.99	10.74
Bra022509.1-P	Field mustard	cytosol	18.85	10.62
Bra011852.1-P	Field mustard	cytosol	19.37	10.36
AT1G77880.1	Thale cress	cytosol	1.05	1.54

Protein Annotations

EnsemblPlants:Bra002939.1	EnsemblPlants:Bra002939.1-P	EnsemblPlantsGene:Bra002939	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23
PFAM:PF01344	SUPFAM:SSF117281	UniParc:UPI0002544298	UniProt:M4CFF7	MapMan:35.1	:

Description

AT4G11750 (E=4e-027) | kelch repeat-containing F-box family protein

Coordinates

chrA10:+:6603775..6604451

Molecular Weight (calculated)

22083.0 Da

IEP (calculated)

7.640

GRAVY (calculated)

-0.173

Length

191 amino acids

Sequence
(BLAST)

001: MVLYDTSHGE IARLPIYIMI GGYNNLEPSS RVFVMDCWVH TWHEAPSMLV ARKHPIHVPS PSAKIYERHI DHCCSFKGNL CLLFRDKAVV YNPKENKWDV
101: VAKELKMLCS CDYDSCIMDN VIYTYSGGSF RMLNWYDCVE RSWGDLKGMK KLPELPKAYR GSLRLENCGG NIVLLWEENV CSICSMKEKM I

Best Arabidopsis Sequence Match ( AT4G11770.1 )
(BLAST)

001: MMNGIKSSPC NMPYLPDDLL LNILGRVSRL YYPILSLVSK RFRSLVGSLE LYKIRTLLGR RTENCLYLSL RFSYGSNPRW FTLCRRPTRT PSPEPNLKSR
101: WFTSCFRPIL TNLTRATSKE EKKLSENLMV SIPTSNDCPL SGLTCNTIGS YIYMIGGYIN GVLSSRVFFL DCRSHTWHEA PSMQVARKSP LVNVLDGKIY
201: VVEGWRGSDY SNLIEIFDPK TQKWEHVPSP SAEMRGRYIS KGLVYEEKLY LFGDKNVVYK PKESRWDALG FDMNLWLVSY GSSCVIDNVC YMVFYKRLIW
301: YDSEVRYWRV LKGLEKLPKL RHRRSCIRMV DYGGKIAILW EKKVRVVGSD KKMIWCTEIA LERRSAHKIY GKIEWCDVVL TVPKSCSLLE FIAVTI

Arabidopsis Description

Putative F-box/kelch-repeat protein At4g11770 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0E4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.