Factsheet for Bra040886.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86750	Canola	cytosol	26.74	92.04
CDY13275	Canola	mitochondrion	47.04	87.98
Bra040994.1-P	Field mustard	cytosol	19.79	85.56
AT4G11750.1	Thale cress	cytosol	55.78	56.22
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	30.08	42.55
Bra001343.1-P	Field mustard	nucleus	28.79	42.11
Bra033628.1-P	Field mustard	nucleus	41.9	41.69
Bra011854.1-P	Field mustard	plastid	40.62	40.62
Bra011856.1-P	Field mustard	nucleus	19.54	39.79
Bra036150.1-P	Field mustard	plastid	37.53	39.35
Bra032688.1-P	Field mustard	cytosol	35.48	39.09
Bra022509.1-P	Field mustard	cytosol	33.93	38.94
Bra011855.1-P	Field mustard	plastid	24.16	37.75
Bra011300.1-P	Field mustard	cytosol	36.76	37.43
Bra011853.1-P	Field mustard	cytosol	39.33	37.23
Bra002939.1-P	Field mustard	cytosol	18.25	37.17
Bra023735.1-P	Field mustard	nucleus	34.7	36.1
Bra018362.1-P	Field mustard	cytosol	33.93	35.01
Bra030332.1-P	Field mustard	cytosol	34.96	34.78
Bra017635.1-P	Field mustard	plasma membrane	33.42	34.67
Bra006063.1-P	Field mustard	cytosol	16.45	34.59
Bra029716.1-P	Field mustard	mitochondrion	30.85	33.99
Bra011852.1-P	Field mustard	cytosol	30.85	33.61
Bra011851.1-P	Field mustard	cytosol, plastid	35.73	33.49
Bra000083.1-P	Field mustard	extracellular	29.31	32.39
Bra017634.1-P	Field mustard	extracellular	17.22	31.6
Bra029718.1-P	Field mustard	nucleus	32.13	31.49

Protein Annotations

EnsemblPlants:Bra040886.1	EnsemblPlants:Bra040886.1-P	EnsemblPlantsGene:Bra040886	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000253E9E5	UniProt:M4FIF7	MapMan:35.1	:

Description

AT4G11750 (E=6e-111) | kelch repeat-containing F-box family protein

Coordinates

chrScaffold000295:-:26854..28023

Molecular Weight (calculated)

44802.6 Da

IEP (calculated)

9.239

GRAVY (calculated)

-0.049

Length

389 amino acids

Sequence
(BLAST)

001: MKNGEECSPQ SPVNMITHLP DDLLLNCLAR VSRLYYPILS LVSKKFRSLI ASLELYQTRT LLGHSESCLY VYLGFSNDSK LDPRWFTLCK RPTRNPSPNP
101: NLGWFTPCFG LRRILTKRLS NNLMVPVPTS NFSAVYWPYG AIGSNIYTIV EYVHGELSFD RVFYLDCRSH TWHEAPIMWM IRSSPLIRVL DGKLYVLNGF
201: PSNSIEIFDP KTQLWDYVRC PIAEILGTRS SLISFAIDGG FYLYGDKCMV YKPKENKWDV VEYETGLVWA SFRLSCVINN VVYSSKLSRV LKWYDSEGRL
301: WRYLKGLDKL PKLPKSFSRL RLVNYGGKIA VLWEKSGGVS SREKKMIWCA VIAVERRSGQ EIYGKIEWCE VVLTVPKSCC LLEFFAVTV

Best Arabidopsis Sequence Match ( AT4G11770.1 )
(BLAST)

001: MMNGIKSSPC NMPYLPDDLL LNILGRVSRL YYPILSLVSK RFRSLVGSLE LYKIRTLLGR RTENCLYLSL RFSYGSNPRW FTLCRRPTRT PSPEPNLKSR
101: WFTSCFRPIL TNLTRATSKE EKKLSENLMV SIPTSNDCPL SGLTCNTIGS YIYMIGGYIN GVLSSRVFFL DCRSHTWHEA PSMQVARKSP LVNVLDGKIY
201: VVEGWRGSDY SNLIEIFDPK TQKWEHVPSP SAEMRGRYIS KGLVYEEKLY LFGDKNVVYK PKESRWDALG FDMNLWLVSY GSSCVIDNVC YMVFYKRLIW
301: YDSEVRYWRV LKGLEKLPKL RHRRSCIRMV DYGGKIAILW EKKVRVVGSD KKMIWCTEIA LERRSAHKIY GKIEWCDVVL TVPKSCSLLE FIAVTI

Arabidopsis Description

Putative F-box/kelch-repeat protein At4g11770 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0E4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.