Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12136 | Canola | cytosol | 36.28 | 49.4 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 38.05 | 40.57 |
| Bra040886.1-P | Field mustard | cytosol | 92.04 | 26.74 |
| CDY41983 | Canola | cytosol | 49.56 | 21.96 |
| CDY41985 | Canola | plastid | 50.44 | 21.43 |
| CDY42633 | Canola | plastid | 50.44 | 20.73 |
| AT4G11750.1 | Thale cress | cytosol | 61.95 | 18.13 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 53.1 | 17.49 |
| CDY68916 | Canola | nucleus | 46.9 | 17.32 |
| CDY51548 | Canola | plastid | 51.33 | 17.11 |
| CDY53174 | Canola | cytosol | 48.67 | 17.03 |
| CDY09006 | Canola | nucleus | 45.13 | 16.72 |
| CDY63148 | Canola | cytosol | 47.79 | 16.31 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 48.67 | 16.27 |
| CDY57171 | Canola | cytosol | 46.9 | 16.16 |
| CDX91543 | Canola | plastid | 47.79 | 15.74 |
| CDY35547 | Canola | cytosol | 33.63 | 15.08 |
| CDY41984 | Canola | cytosol | 50.44 | 14.88 |
| CDY29974 | Canola | plasma membrane | 43.36 | 14.85 |
| CDY01110 | Canola | cytosol | 46.02 | 14.73 |
| CDY53173 | Canola | nucleus, plastid | 47.79 | 14.56 |
| CDX75197 | Canola | cytosol | 46.9 | 14.32 |
| CDY00653 | Canola | cytosol | 41.59 | 14.2 |
| CDY02008 | Canola | cytosol | 46.02 | 14.09 |
| CDY13275 | Canola | mitochondrion | 25.66 | 13.94 |
| CDY15927 | Canola | cytosol | 47.79 | 13.85 |
| CDY42632 | Canola | cytosol | 46.9 | 13.84 |
| CDX99633 | Canola | mitochondrion | 47.79 | 13.78 |
| CDY19889 | Canola | cytosol | 42.48 | 13.71 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 50.44 | 13.67 |
| CDY41986 | Canola | cytosol | 49.56 | 13.59 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 42.48 | 13.01 |
| CDX72460 | Canola | extracellular | 45.13 | 12.88 |
| CDX72687 | Canola | cytosol | 35.4 | 11.94 |
| CDY07711 | Canola | extracellular | 36.28 | 11.65 |
| CDY62432 | Canola | golgi | 40.71 | 10.53 |
| CDY44215 | Canola | plasma membrane | 24.78 | 9.79 |
| CDY27975 | Canola | nucleus, plastid | 28.32 | 9.64 |
| CDY51549 | Canola | plastid | 15.04 | 9.39 |
| CDY13276 | Canola | cytosol | 28.32 | 8.74 |
| CDX98384 | Canola | plastid | 23.89 | 8.54 |
| CDY49285 | Canola | golgi, plasma membrane | 36.28 | 7.01 |
| CDY41987 | Canola | plastid | 44.25 | 6.99 |
| CDY42635 | Canola | nucleus | 45.13 | 6.82 |
| CDX78384 | Canola | cytosol | 7.96 | 6.25 |
| CDX81183 | Canola | cytosol | 12.39 | 5.91 |
| CDY36006 | Canola | cytosol | 11.5 | 5.88 |
| CDY42631 | Canola | nucleus | 14.16 | 5.57 |
| CDY16283 | Canola | cytosol | 7.08 | 5.48 |
| CDY66883 | Canola | extracellular | 7.96 | 4.29 |
Protein Annotations
| EnsemblPlants:CDX86750 | EnsemblPlantsGene:GSBRNA2T00145467001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | PFAM:PF00646 | PFscan:PS50181 |
| ProteinID:CDX86750 | ProteinID:CDX86750.1 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EE10E1 | MapMan:35.1 |
Description
BnaA09g21400D
Coordinates
chrLK031847:+:434837..436012
Molecular Weight (calculated)
12800.7 Da
IEP (calculated)
7.792
GRAVY (calculated)
0.123
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNGQECSPQ SPVNMITHLP DDLLLNCLAR VSRLYYPILS LVSKKFRSLI ASLELYQTRT LLGHSESCLY LHLGFSNDSK RSGQEIYGKI EWCEVVLTVP
101: KSCCLLEFFA VTV
101: KSCCLLEFFA VTV
001: MRKKKKKIVL SSTSEAEKVS IPYLPDDLLL NCLARISRLY YPTLSLVSKR FRSLLASTEL YETRRLLGTS ESCLYFFMTE RRNDHEVYGK VEWCHVVHTL
101: PLFNLSRALS CYHCLSHCFL MIIYIILFSI
101: PLFNLSRALS CYHCLSHCFL MIIYIILFSI
Arabidopsis Description
Putative F-box protein At1g77880 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.