CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011852.1-P	Field mustard	cytosol	31.42	65.83
CDY41987	Canola	plastid	60.16	62.94
CDX84184	Canola	cytosol, nucleus, vacuole	6.42	45.28
CDX86750	Canola	cytosol	6.82	45.13
CDY12136	Canola	cytosol	4.95	44.58
CDY41983	Canola	cytosol	14.17	41.57
AT1G61540.1	Thale cress	cytosol	22.33	41.54
CDY41985	Canola	plastid	14.17	39.85
CDY42632	Canola	cytosol	20.05	39.16
CDY41984	Canola	cytosol	19.65	38.38
CDY42633	Canola	plastid	13.77	37.45
CDY00653	Canola	cytosol	15.91	35.95
CDX75197	Canola	cytosol	17.38	35.14
CDY09006	Canola	nucleus	14.3	35.08
CDY53173	Canola	nucleus, plastid	17.38	35.04
CDY68916	Canola	nucleus	14.17	34.64
CDY42634	Canola	cytosol, nucleus, plastid	19.12	34.29
CDY15927	Canola	cytosol	17.65	33.85
CDY51548	Canola	plastid	15.24	33.63
CDY63148	Canola	cytosol	14.84	33.53
CDY41986	Canola	cytosol	18.45	33.5
CDY01110	Canola	cytosol	15.78	33.43
CDX78384	Canola	cytosol	6.42	33.33
CDX99633	Canola	mitochondrion	17.38	33.16
CDX91543	Canola	plastid	15.11	32.94
CDY16374	Canola	cytosol, nucleus, peroxisome	14.57	32.25
CDY49284	Canola	extracellular, plasma membrane, vacuole	15.64	31.71
CDY29938	Canola	cytosol, peroxisome, plasma membrane	14.44	31.49
CDX72687	Canola	cytosol	14.04	31.34
CDY07711	Canola	extracellular	14.71	31.25
CDY29974	Canola	plasma membrane	13.64	30.91
CDX72460	Canola	extracellular	16.31	30.81
CDY42631	Canola	nucleus	11.63	30.31
CDY16283	Canola	cytosol	5.88	30.14
CDY53174	Canola	cytosol	12.97	30.03
CDY19889	Canola	cytosol	14.04	30.0
CDY02008	Canola	cytosol	14.44	29.27
CDY57171	Canola	cytosol	12.7	28.96
CDY35547	Canola	cytosol	9.63	28.57
CDY13275	Canola	mitochondrion	7.62	27.4
CDY27975	Canola	nucleus, plastid	12.03	27.11
CDX98384	Canola	plastid	11.36	26.9
CDY62432	Canola	golgi	15.64	26.77
CDY36006	Canola	cytosol	7.62	25.79
CDY51549	Canola	plastid	6.15	25.41
CDY44215	Canola	plasma membrane	9.49	24.83
CDY66883	Canola	extracellular	6.82	24.29
CDY49285	Canola	golgi, plasma membrane	14.71	18.8
CDX81183	Canola	cytosol	5.61	17.72
CDY13276	Canola	cytosol	8.56	17.49

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078HVZ7	EnsemblPlants:CDY42635	ProteinID:CDY42635	ProteinID:CDY42635.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00075142001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0004EE9845	SEG:seg	:	:	:

Description

BnaC01g00470DBnaC01g00470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVZ7]

Coordinates

chrLK032530:-:171922..175584

Molecular Weight (calculated)

86309.0 Da

IEP (calculated)

8.452

GRAVY (calculated)

-0.354

Length

748 amino acids

Sequence
(BLAST)

001: MSSKSRSLAA TSVEDPPHNK KMKQTEHTSI LILSLPDDLL INCLARVSRL YYHFLSRVSK RFRSIIASPE LYATRSRLNR TEKCIYLYLR FPFDPKTYWL
101: TLSGLPSRNV ANGSSGYYME QIPCPNYLRP AQSSTLVSVG SDIYKIGGAN HLHECKIWKR NYCVSVSVLD CRTHTWRQAP SMGMAHYVSK PNWIEAFDLE
201: TQTWGPVTNP RIFRLYEEDR VKGFEAKTVS LEGKLYIFGD EAAIGFLWDQ YLYTATNQEC RVWCAEIALE RRDGDEMWGK VDCTDAQAVR DWSYCYPDTV
301: DDLLIPNHQE TREEVSHSNG KLTGIVRLVI VCYQPNRVHF FWLVYTLSLI QGCNLYTYMY LYVRACTNVR WLKNVSCDIY DLTLLIWNKV LMSSKSRSSA
401: ATSRKDPPHD KKMPATEPMS ISFSSLPDDL LINCLARVSR LYYPALSCVS KNFRSIIASP EIYQTRSSLN RTEKCIYLYL SFCRDPETYW FTMRRRPSRN
501: IANESSGYYM EMVPSPKYLH PAQSSTLVAV GSDVYKIGGG DHSTCKLSKR KCSYSFSVLD CRTHTWRQAP SMWMERDSSS TATFFDGKIY VAGGCDKRYV
601: GYPDRVEAFD LEKQTWGFVT NPRVFDRYHK FKAARECHCV IDDVLFFWES GAFKWHDSKT RLCKEVSDVK GLPDLHDPKF CKMAMVDLGG KMGLLWNTKT
701: SQECKIWCAE ITFERRHGDE MWGKVEWFDS VLSTHVSCSS FYAVSASV

Best Arabidopsis Sequence Match ( AT4G39590.1 )
(BLAST)

001: MFPMSSTSRS SAANNRKDPP RKKNKETPSP VTREPTSIDS LPNDLLLNCF ARVSRMYYPA LSRVSKRFRS IVTSPEIYNT RSLLNRTEKC LYLCLRFPFD
101: NNTHWFTLYQ NPNRTVSDKV FLQIPSPQYP LTLSSNLVAV GSNIYRIGGT VGDDSCPLGF DREPSSKVSI LDCRSHTWRD GPRMRLNRRS STTSVVDGKI
201: YVTGGTEDTD NPSHWIEVFD PKTQSWGTVT NPHIVKVWEE VCYRRAVKSI GHDGKLYLSG DKYVVYDPDE GKWNSVEEHW LIGYAIGSSN CVVDNILFYW
301: DQGVFKWYDS KVSSWKQLKG LEGLPDDFSQ REYCKLVDLG GKMAVLWDKW EYSGVCMIFC AEISLEKRDG DEIWGKVEWF DTVLEVGASC SLKSADALSA
401: SV

Arabidopsis Description

F-box/kelch-repeat protein At4g39590 [Source:UniProtKB/Swiss-Prot;Acc:Q1PE10]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.