CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030332.1-P	Field mustard	cytosol	97.18	96.93
CDX99633	Canola	mitochondrion	93.08	92.6
CDY12136	Canola	cytosol	10.51	49.4
CDY51548	Canola	plastid	41.79	48.08
CDY02008	Canola	cytosol	45.38	47.97
CDX86750	Canola	cytosol	13.85	47.79
CDY41983	Canola	cytosol	30.51	46.67
CDY57171	Canola	cytosol	38.97	46.34
CDX84184	Canola	cytosol, nucleus, vacuole	12.31	45.28
CDY09006	Canola	nucleus	35.38	45.25
CDY68916	Canola	nucleus	34.87	44.44
CDY42633	Canola	plastid	31.28	44.36
CDY53174	Canola	cytosol	36.41	43.96
CDY16374	Canola	cytosol, nucleus, peroxisome	37.69	43.49
CDY41985	Canola	plastid	29.49	43.23
CDY51549	Canola	plastid	20.0	43.09
CDX72687	Canola	cytosol	36.92	42.99
CDY53173	Canola	nucleus, plastid	40.77	42.86
CDX91543	Canola	plastid	37.44	42.57
CDY63148	Canola	cytosol	35.38	41.69
CDY41984	Canola	cytosol	39.23	39.95
CDY01110	Canola	cytosol	36.15	39.94
CDY00653	Canola	cytosol	33.33	39.27
CDY42632	Canola	cytosol	38.46	39.16
CDY66883	Canola	extracellular	20.77	38.57
CDX75197	Canola	cytosol	34.87	36.76
CDY16283	Canola	cytosol	13.59	36.3
CDY42634	Canola	cytosol, nucleus, plastid	37.18	34.77
CDX78384	Canola	cytosol	12.82	34.72
CDY41986	Canola	cytosol	36.67	34.71
CDY29938	Canola	cytosol, peroxisome, plasma membrane	30.51	34.69
CDX72460	Canola	extracellular	34.36	33.84
CDY19889	Canola	cytosol	30.0	33.43
CDY35547	Canola	cytosol	21.54	33.33
CDY49284	Canola	extracellular, plasma membrane, vacuole	31.28	33.06
CDY42631	Canola	nucleus	24.1	32.75
CDY07711	Canola	extracellular	29.49	32.67
CDY29974	Canola	plasma membrane	25.38	30.0
CDY27975	Canola	nucleus, plastid	25.38	29.82
CDY13275	Canola	mitochondrion	15.9	29.81
CDX98384	Canola	plastid	23.33	28.8
CDY36006	Canola	cytosol	16.15	28.51
CDY62432	Canola	golgi	31.79	28.38
CDY44215	Canola	plasma membrane	19.23	26.22
CDY13276	Canola	cytosol	20.26	21.58
CDX81183	Canola	cytosol	12.31	20.25
CDY49285	Canola	golgi, plasma membrane	29.74	19.83
CDY41987	Canola	plastid	34.62	18.88
CDY42635	Canola	nucleus	33.85	17.65

Protein Annotations

Gene3D:2.120.10.80	Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078FST9	EnsemblPlants:CDY15927	ProteinID:CDY15927
ProteinID:CDY15927.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00090298001	InterPro:IPR001810	InterPro:IPR015915	InterPro:IPR032675	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
InterPro:LRR_dom_sf	PFAM:PF00646	PFAM:PF01344	PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EF486C	SEG:seg	:

Description

BnaA04g11840DBnaA04g11840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FST9]

Coordinates

chrLK032059:+:582701..583873

Molecular Weight (calculated)

44155.4 Da

IEP (calculated)

8.869

GRAVY (calculated)

-0.359

Length

390 amino acids

Sequence
(BLAST)

001: MPPSSTANLY RRILLLVKKK NKKKKLSPEL PQTPQQSTPI SSLPDDLLLT CFARISRSYY PTLSLVSKRF RSLLSSPELY ETRSLIGRTE SCLYLSLRFP
101: PDPNTRWFTL CRKPDKTLAK KKKSSGNLLV PVSVLNAPPV DWTTLVAVGP YIYAICGHVE KAPCSNIPFL DCRTHTWLEA PSLRLAYTDS EHDGKMYLAG
201: NGEDPTSLNC IEVFNTKTRT WKPVPPGKRE LHGKNMEGKM IVASVNKTTG EKGLAFKPKE RTGELLGSNT DWDSPCMIGN IAYYYRSCSG EFEWFDTKND
301: NVFGKLQGLE GLPEFAGYSC VKLVEHGGKM LVLWDMYAPA RGFREEIIWC AEIKLERRSC EEIRGEVEWF DAVLKVPKSY EFMYAISCTV

Best Arabidopsis Sequence Match ( AT4G39600.2 )
(BLAST)

001: MSSSTASATT GMKGKKPSIE IATSNPSLPE DLVVSCLARV SRLYYPTLSL VSKSFRSLIA SPDLYKTRSL LGRTESCLYL CLRYSPEDNP RWFTLCRKPN
101: RRTLSKEKNE SSGNLLVPIP IINSPPLEWS SIVAVGSHLY AINGPIEDAP CSNVSFLDCR SHTWLEAPSM RVAHTNSQLD GKMYLAGSSE NVDSLNCIQV
201: FSTKTQTWKP VPFQKRIFGV GDLEGKIYTI CRTECGQGVT IKPKDLTCDV VGFCGEKDWS SVCMIGNIVY FYRPNGEFLW IYSGKGESAR RNLKGLEGLP
301: KFDDYASVKL VDYGGKLMVL WDTYVPESES KEKMIWCAEI SLQKKCNNEE IWGTVEWFDA VLTVPEDCKF VRAIAATV

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:TAIR;Acc:AT4G39600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.