Factsheet for Bra030332.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15927	Canola	cytosol	96.93	97.18
CDX99633	Canola	mitochondrion	94.12	93.88
Bra018362.1-P	Field mustard	cytosol	45.78	47.48
Bra011856.1-P	Field mustard	nucleus	22.76	46.6
Bra001343.1-P	Field mustard	nucleus	31.46	46.24
Bra011854.1-P	Field mustard	plastid	44.25	44.47
Bra033628.1-P	Field mustard	nucleus	43.22	43.22
Bra022509.1-P	Field mustard	cytosol	37.34	43.07
Bra036150.1-P	Field mustard	plastid	40.66	42.86
Bra040994.1-P	Field mustard	cytosol	9.46	41.11
Bra023735.1-P	Field mustard	nucleus	39.13	40.91
Bra032688.1-P	Field mustard	cytosol	36.32	40.23
Bra011855.1-P	Field mustard	plastid	24.04	37.75
Bra011300.1-P	Field mustard	cytosol	34.78	35.6
Bra011853.1-P	Field mustard	cytosol	37.34	35.52
Bra017635.1-P	Field mustard	plasma membrane	34.02	35.47
Bra011851.1-P	Field mustard	cytosol, plastid	37.34	35.18
Bra040886.1-P	Field mustard	cytosol	34.78	34.96
Bra029716.1-P	Field mustard	mitochondrion	30.69	33.99
Bra011852.1-P	Field mustard	cytosol	30.69	33.61
Bra006063.1-P	Field mustard	cytosol	15.86	33.51
Bra029718.1-P	Field mustard	nucleus	33.76	33.25
Bra000083.1-P	Field mustard	extracellular	29.92	33.24
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	22.76	32.36
Bra017634.1-P	Field mustard	extracellular	16.11	29.72
Bra002939.1-P	Field mustard	cytosol	10.74	21.99

Protein Annotations

Gene3D:2.120.10.80	Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra030332	EnsemblPlants:Bra030332.1	EnsemblPlants:Bra030332.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR015915	InterPro:IPR032675	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:LRR_dom_sf	UniProt:M4ENG2
PFAM:PF00646	PFAM:PF01344	PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002543A64	SEG:seg	:	:

Description

AT4G39600 (E=3e-117) | kelch repeat-containing F-box family protein

Coordinates

chrA04:-:9048458..9049633

Molecular Weight (calculated)

44292.5 Da

IEP (calculated)

8.606

GRAVY (calculated)

-0.346

Length

391 amino acids

Sequence
(BLAST)

001: MPPSSTANLY RRILLLVKKK KKKKKPSPEL PQTPQQSTPI SSLPDDLLLT CFARISRSYY PTLSLVSKRF RSLLSSPELY ETRSLIGRTE SCLYLCLRFP
101: PDPNTRWFTL CRKPEFQTLT SKKKSSGNIL VPVSVLNAPP VDWTTLVAVG PYIYAICGHV EKAPCSTVPF LDCRTHTWLE APSLRLAYTD SEHDGKMYLA
201: GNGEDPTSLN CIEVFNTKTR TWQPVPPGKR ELHGKNMEGK MIVASVNKTT GEKGLAFKPK ERTGELLGSN TDWDSPCMIG NIAYYYRSCS GEFEWFDTKN
301: DNVFGKLQGL EGLPEFAGYS CVKLVEHGGK MLVLWDMYAP ARGFREEIIW CAEIKLERRS CEEIRGEVEW FDAVLKVPKS YEFMYAISCT V

Best Arabidopsis Sequence Match ( AT4G39600.2 )
(BLAST)

001: MSSSTASATT GMKGKKPSIE IATSNPSLPE DLVVSCLARV SRLYYPTLSL VSKSFRSLIA SPDLYKTRSL LGRTESCLYL CLRYSPEDNP RWFTLCRKPN
101: RRTLSKEKNE SSGNLLVPIP IINSPPLEWS SIVAVGSHLY AINGPIEDAP CSNVSFLDCR SHTWLEAPSM RVAHTNSQLD GKMYLAGSSE NVDSLNCIQV
201: FSTKTQTWKP VPFQKRIFGV GDLEGKIYTI CRTECGQGVT IKPKDLTCDV VGFCGEKDWS SVCMIGNIVY FYRPNGEFLW IYSGKGESAR RNLKGLEGLP
301: KFDDYASVKL VDYGGKLMVL WDTYVPESES KEKMIWCAEI SLQKKCNNEE IWGTVEWFDA VLTVPEDCKF VRAIAATV

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:TAIR;Acc:AT4G39600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.