Factsheet for Bra029716.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
extracellular 1
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36006	Canola	cytosol	61.47	98.19
Bra029718.1-P	Field mustard	nucleus	98.58	87.66
CDY27975	Canola	nucleus, plastid	70.25	74.7
Bra000083.1-P	Field mustard	extracellular	62.32	62.5
Bra006063.1-P	Field mustard	cytosol	22.95	43.78
Bra001343.1-P	Field mustard	nucleus	32.01	42.48
AT3G08810.1	Thale cress	nucleus	41.08	42.27
Bra040994.1-P	Field mustard	cytosol	10.76	42.22
AT5G51250.1	Thale cress	cytosol	43.63	41.85
Bra036150.1-P	Field mustard	plastid	43.91	41.78
AT2G03460.1	Thale cress	plastid	29.75	40.86
Bra023735.1-P	Field mustard	nucleus	42.21	39.84
AT3G06570.1	Thale cress	cytosol, plastid	43.06	38.97
Bra011856.1-P	Field mustard	nucleus	18.98	35.08
Bra032688.1-P	Field mustard	cytosol	34.84	34.84
Bra011854.1-P	Field mustard	plastid	37.68	34.19
Bra033628.1-P	Field mustard	nucleus	37.39	33.76
Bra011855.1-P	Field mustard	plastid	22.95	32.53
Bra022509.1-P	Field mustard	cytosol	29.75	30.97
Bra040886.1-P	Field mustard	cytosol	33.99	30.85
Bra030332.1-P	Field mustard	cytosol	33.99	30.69
Bra017635.1-P	Field mustard	plasma membrane	32.58	30.67
Bra018362.1-P	Field mustard	cytosol	32.58	30.5
Bra011853.1-P	Field mustard	cytosol	33.99	29.2
Bra011852.1-P	Field mustard	cytosol	28.9	28.57
Bra011851.1-P	Field mustard	cytosol, plastid	32.86	27.95
Bra011300.1-P	Field mustard	cytosol	29.75	27.49
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	20.68	26.55
Bra002939.1-P	Field mustard	cytosol	13.31	24.61
Bra017634.1-P	Field mustard	extracellular	14.73	24.53

Protein Annotations

EnsemblPlants:Bra029716.1	EnsemblPlants:Bra029716.1-P	EnsemblPlantsGene:Bra029716	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23
PFAM:PF07646	SUPFAM:SSF117281	UniParc:UPI0002547CF9	UniProt:M4ELP7	MapMan:35.1	:

Description

AT5G51250 (E=2e-061) | kelch repeat-containing F-box family protein

Coordinates

chrA05:-:22531229..22532290

Molecular Weight (calculated)

39902.0 Da

IEP (calculated)

7.949

GRAVY (calculated)

-0.061

Length

353 amino acids

Sequence
(BLAST)

001: MIVARVPRSY YRTLSLVSTS FRCMVVSPEL YTVRSLLGLT ETCLYVCLRF GFTCYKWYTL SSKSSDGGGY VLTRVLTLDD NSPRMMGLCY SDLVAVGSDI
101: YNIGVADKNK TMPTSGVSIL DCKTHRWRKS PRMPVELTEL SARVLDRKIY VLGRRFHHLD GSWKSSFEVF NTNTQTWDLP SCGGFDSARI NFLIDGKLHV
201: VTLFDGVFAF DSKQCRWDLV EQYPSTGTMC SGSFCEVDNV LYSVSKDGAL TWYDSDNTSW RDLNGLVGLP KLPSPLDGYG SYVKLTGYGG GKMMVFWNCN
301: LGIHRPFQRD TIYCAEIALE RRNGDCWGKL EWFDSMLLVP LETQFVKVLA VTL

Best Arabidopsis Sequence Match ( AT3G06570.1 )
(BLAST)

001: MSSMLSPPVK KRKIVAPQSQ SASASFQSLP DDLILSIVAR VPRLYHRTVS LVCKSFRSLL VSPELYKARS VSGHTESCLY LSIACYPDYR MFTLCRKPDQ
101: TLTTSEEEEK KKSNGYYLAP VPDPDSHPVY FSSLVTVGSD IYNIAGSHAS SNVSILDCRS NTWREAPRLG VELTSVSASV LDRKIFVVGM YADDEESESK
201: NDFFEVLDTE THTWDPQPFN CSETKDKFLN CRTAFIDGKF LVKPWIHRGV VAYNSKESRW EPVQTKMAMS MFNDSYCQIH NVIYLAFDGR IRWYDDALNC
301: WGDVQGLLEL GNIPHGPSCV RLADYRGNIA VFWFRYLPDN DDYKWKMIWC AEIALERRTS WEIWGKVLWF DPVLTVPADY EFVKALAATV

Arabidopsis Description

F-box/kelch-repeat protein At3g06570 [Source:UniProtKB/Swiss-Prot;Acc:Q94K34]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.