Factsheet for Bra011854.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014159.1-P
Bra018756.1-P
Bra018757.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39550.1	Bra039504.1-P	AT2G03170.1	14749489
AT4G39550.1	Bra014159.1-P	AT3G60010.1	14749489
AT4G39550.1	Bra018756.1-P	AT3G60010.1	14749489
AT4G39550.1	Bra018757.1-P	AT3G60010.1	14749489

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41985	Canola	plastid	63.75	93.23
CDY42633	Canola	plastid	58.61	82.91
Bra011856.1-P	Field mustard	nucleus	31.88	64.92
Bra033628.1-P	Field mustard	nucleus	61.95	61.64
AT4G39550.1	Thale cress	nucleus	56.81	56.38
Bra001343.1-P	Field mustard	nucleus	35.22	51.5
Bra022509.1-P	Field mustard	cytosol	43.96	50.44
Bra032688.1-P	Field mustard	cytosol	44.73	49.29
Bra023735.1-P	Field mustard	nucleus	46.53	48.4
Bra040994.1-P	Field mustard	cytosol	10.8	46.67
Bra036150.1-P	Field mustard	plastid	43.44	45.55
Bra030332.1-P	Field mustard	cytosol	44.47	44.25
Bra018362.1-P	Field mustard	cytosol	39.85	41.11
Bra011855.1-P	Field mustard	plastid	26.22	40.96
Bra011852.1-P	Field mustard	cytosol	37.53	40.9
Bra040886.1-P	Field mustard	cytosol	40.62	40.62
Bra017635.1-P	Field mustard	plasma membrane	38.3	39.73
Bra011853.1-P	Field mustard	cytosol	41.39	39.17
Bra011300.1-P	Field mustard	cytosol	37.53	38.22
Bra000083.1-P	Field mustard	extracellular	34.45	38.07
Bra029716.1-P	Field mustard	mitochondrion	34.19	37.68
Bra011851.1-P	Field mustard	cytosol, plastid	40.1	37.59
Bra029718.1-P	Field mustard	nucleus	36.76	36.02
Bra006063.1-P	Field mustard	cytosol	16.71	35.14
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	24.68	34.91
Bra017634.1-P	Field mustard	extracellular	18.25	33.49
Bra002939.1-P	Field mustard	cytosol	14.14	28.8

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra011854	EnsemblPlants:Bra011854.1	EnsemblPlants:Bra011854.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4D5U7	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002546052
SEG:seg	:	:	:	:	:

Description

AT4G39550 (E=4e-103) | kelch repeat-containing F-box family protein

Coordinates

chrA01:-:219531..220700

Molecular Weight (calculated)

43555.9 Da

IEP (calculated)

8.840

GRAVY (calculated)

-0.326

Length

389 amino acids

Sequence
(BLAST)

001: MSFPVKKRKT MKKPSVNKNK KAPPPPESTP NPSLPDDLLL SCFARASRLY YPTLSLVSKS FASLVSSPEL YKTRSSSGRT ESCLYVCLSF HPDPIPRWFT
101: LCRKPDRTLT TKKKPSGYAL AKLPTPPSRS ENWSGLVAVG SDIYNIGGPI DEANEPSSSV SVLDCRSNTW RDGPSMLVER DYPHANVIDG KIYVAGDSNS
201: TSPDWMEVFH PKTQTWELLP SLPAAEMRLL YDSISTSAGI DGKVHVFGSC NGLVYDTREG RWESADMEMS SEWVWFSYCV VENVIYVYNN EEFKWYDSAV
301: RLWKVLKGLK GLPKFPRYTA RLADFGGKLA VLWGRGVASS GYVDKIIWCA VIALERRSDQ EIWGKVEWKE AVLKVPKSCS IDYALAATV

Best Arabidopsis Sequence Match ( AT4G39550.1 )
(BLAST)

001: MSSPEKKRKT TKKPSPTPQS TTPNPSLPDD LVVSCLARVS RLYYPTLSLV SKSFRSLIAS PDLYKTRSLL GRTESCLYVC LQEKDSDPNP RWFTLCLKPN
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV

Arabidopsis Description

F-box/kelch-repeat protein At4g39550 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVA3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.