Factsheet for Bra018756.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003700.1-P
Bra004092.1-P
Bra004220.1-P
Bra007086.1-P
Bra008345.1-P
Bra011854.1-P
Bra011856.1-P
Bra013776.1-P
Bra014802.1-P
Bra015474.1-P
Bra015630.1-P
Bra020625.1-P
Bra020714.1-P
Bra030639.1-P
Bra033585.1-P
Bra033628.1-P
Bra034004.1-P
Bra034254.1-P
Bra036183.1-P
Bra036257.1-P
Bra036266.1-P
Bra037508.1-P
Bra038977.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60010.1	Bra015474.1-P	AT1G06110.1	12169662
AT3G60010.1	Bra030639.1-P	AT1G06110.1	12169662
AT3G60010.1	Bra038977.1-P	AT1G55000.1	12169662
AT3G60010.1	Bra004092.1-P	AT1G67340.1	12169662
AT3G60010.1	Bra004220.1-P	AT1G67340.1	12169662
AT3G60010.1	Bra034004.1-P	AT1G67340.1	12169662
AT3G60010.1	Bra003700.1-P	AT1G76920.1	12169662
AT3G60010.1	Bra008345.1-P	AT1G78100.1	12169662
AT3G60010.1	Bra015630.1-P	AT1G78100.1	12169662
AT3G60010.1	Bra034254.1-P	AT2G25490.1	12169662
AT3G60010.1	Bra007086.1-P	AT3G54650.1	19277118
AT3G60010.1	Bra014802.1-P	AT3G54650.1	19277118
AT3G60010.1	Bra036266.1-P	AT4G02440.1	16412087
AT3G60010.1	Bra000874.1-P	AT4G02570.1	16412087
AT3G60010.1	Bra036257.1-P	AT4G02570.1	16412087
AT3G60010.1	Bra013776.1-P	AT4G24210.1	15161962
AT3G60010.1	Bra033585.1-P	AT4G38940.1	12169662
AT3G60010.1	Bra011854.1-P	AT4G39550.1	14749489
AT3G60010.1	Bra011856.1-P	AT4G39550.1	14749489
AT3G60010.1	Bra033628.1-P	AT4G39550.1	14749489
AT3G60010.1	Bra020714.1-P	AT5G48170.1	15161962
AT3G60010.1	Bra036183.1-P	AT5G48170.1	15161962
AT3G60010.1	Bra037508.1-P	AT5G48170.1	15161962
AT3G60010.1	Bra020625.1-P	AT5G49610.1	14749489

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93698	Canola	cytosol	100.0	100.0
Bra018757.1-P	Field mustard	cytosol	77.56	75.62
AT3G60010.1	Thale cress	cytosol	71.15	72.08
Bra008231.1-P	Field mustard	cytosol	73.08	71.25
Bra003735.1-P	Field mustard	cytosol	72.44	70.62
Bra015801.1-P	Field mustard	cytosol	69.23	67.08
Bra014159.1-P	Field mustard	cytosol	64.1	62.89
Bra014519.1-P	Field mustard	cytosol	62.82	61.64
Bra025795.1-P	Field mustard	cytosol	61.54	59.63
Bra012214.1-P	Field mustard	cytosol	50.0	58.21
Bra012216.1-P	Field mustard	cytosol	57.05	55.62
Bra017397.1-P	Field mustard	cytosol	53.21	52.2
Bra039504.1-P	Field mustard	cytosol	56.41	52.07
Bra012213.1-P	Field mustard	cytosol	50.64	51.97

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	EnsemblPlantsGene:Bra018756	EnsemblPlants:Bra018756.1	EnsemblPlants:Bra018756.1-P	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M4DQG3
PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89	InterPro:SKP1
InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382
InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI000253EC5E	SEG:seg	:	:

Description

AT1G75950 (E=5e-045) SKP1, ASK1, ATSKP1, SKP1A, UIP1 | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase

Coordinates

chrA06:+:2171560..2172030

Molecular Weight (calculated)

17519.8 Da

IEP (calculated)

4.190

GRAVY (calculated)

-0.276

Length

156 amino acids

Sequence
(BLAST)

001: MSTSKKIVLK SSDGHIFEVE EAVALQSQTI ANMIEDDCVD NEIPIPNING EILSKVIVYC KKHVVLPDGD SSSSAKEELK AWDAEFMKTD QSTLFNLILA
101: ANFLNIKNLL DLGCQTVADM ITGKTPEEIR TVLNIENDFT PEEEKEIRKE NQWAFE

Best Arabidopsis Sequence Match ( AT1G75950.1 )
(BLAST)

001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE

Arabidopsis Description

SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.