Factsheet for Bra036183.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra014159.1-P
Bra015801.1-P
Bra018756.1-P
Bra018757.1-P
Bra025795.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48170.1	Bra012213.1-P	AT1G20140.1	15161962
AT5G48170.1	Bra012214.1-P	AT1G20140.1	15161962
AT5G48170.1	Bra012216.1-P	AT1G20140.1	15161962
AT5G48170.1	Bra025795.1-P	AT1G20140.1	15161962
AT5G48170.1	Bra003735.1-P	AT1G75950.1	15161962
AT5G48170.1	Bra008231.1-P	AT1G75950.1	15161962
AT5G48170.1	Bra015801.1-P	AT1G75950.1	15161962
AT5G48170.1	Bra012213.1-P	AT2G25700.1	15161962
AT5G48170.1	Bra012214.1-P	AT2G25700.1	15161962
AT5G48170.1	Bra012216.1-P	AT2G25700.1	15161962
AT5G48170.1	Bra025795.1-P	AT2G25700.1	15161962
AT5G48170.1	Bra014159.1-P	AT3G60010.1	15161962
AT5G48170.1	Bra018756.1-P	AT3G60010.1	15161962
AT5G48170.1	Bra018757.1-P	AT3G60010.1	15161962

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19964	Canola	cytosol	99.34	99.34
Bra020714.1-P	Field mustard	cytosol	92.11	89.74
AT5G48170.1	Thale cress	cytosol	88.16	85.35
Bra037508.1-P	Field mustard	cytosol	85.53	82.8
KRH14138	Soybean	nucleus	52.63	51.95
PGSC0003DMT400048479	Potato	cytosol	50.66	50.66
Solyc05g040040.1.1	Tomato	cytosol	50.66	50.66
KRH73996	Soybean	cytosol	50.66	50.0
VIT_12s0057g00720.t01	Wine grape	cytosol	53.29	47.65
PGSC0003DMT400015675	Potato	cytosol	51.32	47.56
Solyc07g047680.1.1	Tomato	cytosol	51.32	46.71
Zm00001d028159_P001	Maize	cytosol	48.03	41.01
Zm00001d048185_P001	Maize	cytosol	48.03	40.56
Os03t0196500-00	Rice	cytosol	46.71	39.89
HORVU4Hr1G071100.2	Barley	cytosol, mitochondrion	48.68	39.78
TraesCS4D01G263600.1	Wheat	cytosol	46.71	39.23
TraesCS4B01G263400.1	Wheat	cytosol	46.71	39.01
TraesCS4A01G042900.1	Wheat	cytosol	47.37	38.92
OQU93068	Sorghum	cytosol	47.37	35.82
Bra013776.1-P	Field mustard	nucleus	23.03	23.97

Protein Annotations

EnsemblPlants:Bra036183.1	EnsemblPlants:Bra036183.1-P	EnsemblPlantsGene:Bra036183	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR12874	PANTHER:PTHR12874:SF10
PFAM:PF12937	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0002541E54	UniProt:M4F529
MapMan:11.6.2.3	MapMan:19.2.2.8.1.4.1	:	:	:	:

Description

AT5G48170 (E=4e-066) SLY2 | SLY2 (SLEEPY2)

Coordinates

chrA09:-:2291684..2292142

Molecular Weight (calculated)

17459.6 Da

IEP (calculated)

10.120

GRAVY (calculated)

0.099

Length

152 amino acids

Sequence
(BLAST)

001: MSKKRIGMVE KSNNKRQRVN LVPKFSINDN HDVLVEILRR LDGPSLCSAA CVCRLWSAVA RNDSIWEELC FLQVSPRPSL SIRSVVSALG GYRRLYFLCI
101: RPFLARLPKI LWSQDQLQLS LSLYCVHYYE RIYVGAAPPS SLMFLRMPVN VV

Best Arabidopsis Sequence Match ( AT5G48170.1 )
(BLAST)

001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV

Arabidopsis Description

SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.