Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015675 | Potato | cytosol | 85.63 | 87.2 |
| Solyc05g040040.1.1 | Tomato | cytosol | 67.66 | 74.34 |
| KRH14138 | Soybean | nucleus | 57.48 | 62.34 |
| KRH73996 | Soybean | cytosol | 56.29 | 61.04 |
| VIT_12s0057g00720.t01 | Wine grape | cytosol | 59.28 | 58.24 |
| CDX86323 | Canola | cytosol | 47.9 | 52.29 |
| CDY19964 | Canola | cytosol | 47.31 | 51.97 |
| CDY54510 | Canola | cytosol | 47.31 | 51.63 |
| Bra036183.1-P | Field mustard | cytosol | 46.71 | 51.32 |
| CDY00072 | Canola | cytosol | 46.71 | 51.32 |
| Bra020714.1-P | Field mustard | cytosol | 47.9 | 51.28 |
| CDY48737 | Canola | cytosol | 47.9 | 51.28 |
| Bra037508.1-P | Field mustard | cytosol | 47.9 | 50.96 |
| AT5G48170.1 | Thale cress | cytosol | 47.9 | 50.96 |
| CDY05699 | Canola | cytosol | 47.31 | 50.64 |
| Os03t0196500-00 | Rice | cytosol | 46.71 | 43.82 |
| Zm00001d028159_P001 | Maize | cytosol | 44.91 | 42.13 |
| TraesCS4D01G263600.1 | Wheat | cytosol | 45.51 | 41.99 |
| Zm00001d048185_P001 | Maize | cytosol | 44.31 | 41.11 |
| TraesCS4B01G263400.1 | Wheat | cytosol | 44.31 | 40.66 |
| HORVU4Hr1G071100.2 | Barley | cytosol, mitochondrion | 44.91 | 40.32 |
| TraesCS4A01G042900.1 | Wheat | cytosol | 44.31 | 40.0 |
| OQU93068 | Sorghum | cytosol | 45.51 | 37.81 |
| Solyc04g078390.1.1 | Tomato | cytosol, mitochondrion, nucleus | 28.14 | 21.76 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0000151 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0043161 |
| InterPro:IPR001810 | UniProt:K4CEX4 | PFAM:PF12937 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 | SUPFAM:SSF81383 |
| EnsemblPlantsGene:Solyc07g047680.1 | EnsemblPlants:Solyc07g047680.1.1 | UniParc:UPI000276AC23 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7:+:58913588..58914091
Molecular Weight (calculated)
18459.4 Da
IEP (calculated)
7.704
GRAVY (calculated)
0.083
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTNFFINDN EDVLIEILKR LDGRSLGVAA CVCKLWCGIA RNDSLWEHLC FRHVSPPLEG VRTVVLALGG YRRLYMVCVR PVLNRLRKWR PVGIESDSEI
101: VRRVYWTRHE VELSLSLFCV DYYERVLLTG GSGDGGGGGG GGRHDGGDAA AAPCVSSLMF LCKAVNV
101: VRRVYWTRHE VELSLSLFCV DYYERVLLTG GSGDGGGGGG GGRHDGGDAA AAPCVSSLMF LCKAVNV
001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
Arabidopsis Description
SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.