Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86323 | Canola | cytosol | 97.39 | 97.39 |
| CDY48737 | Canola | cytosol | 89.54 | 87.82 |
| CDY05699 | Canola | cytosol | 88.89 | 87.18 |
| CDY00072 | Canola | cytosol | 85.62 | 86.18 |
| CDY19964 | Canola | cytosol | 85.62 | 86.18 |
| AT5G48170.1 | Thale cress | cytosol | 86.27 | 84.08 |
| KRH14138 | Soybean | nucleus | 54.9 | 54.55 |
| KRH73996 | Soybean | cytosol | 52.94 | 52.6 |
| Solyc05g040040.1.1 | Tomato | cytosol | 50.33 | 50.66 |
| PGSC0003DMT400048479 | Potato | cytosol | 50.33 | 50.66 |
| VIT_12s0057g00720.t01 | Wine grape | cytosol | 54.25 | 48.82 |
| PGSC0003DMT400015675 | Potato | cytosol | 51.63 | 48.17 |
| Solyc07g047680.1.1 | Tomato | cytosol | 51.63 | 47.31 |
| Zm00001d028159_P001 | Maize | cytosol | 49.67 | 42.7 |
| Zm00001d048185_P001 | Maize | cytosol | 49.67 | 42.22 |
| Os03t0196500-00 | Rice | cytosol | 47.06 | 40.45 |
| TraesCS4D01G263600.1 | Wheat | cytosol | 47.06 | 39.78 |
| TraesCS4B01G263400.1 | Wheat | cytosol | 47.06 | 39.56 |
| TraesCS4A01G042900.1 | Wheat | cytosol | 47.71 | 39.46 |
| HORVU4Hr1G071100.2 | Barley | cytosol, mitochondrion | 47.71 | 39.25 |
| OQU93068 | Sorghum | cytosol | 47.71 | 36.32 |
| CDY34266 | Canola | nucleus | 23.53 | 24.66 |
| CDY03475 | Canola | nucleus | 23.53 | 24.66 |
Protein Annotations
| EnsemblPlants:CDY54510 | EnsemblPlantsGene:GSBRNA2T00014242001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 | PFAM:PF12937 |
| ProteinID:CDY54510 | ProteinID:CDY54510.1 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EF3818 | UniProt:A0A078IWU1 |
| MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | : | : | : | : |
Description
BnaC07g49160DBnaC07g49160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWU1]
Coordinates
chrLK033326:+:5765..6226
Molecular Weight (calculated)
17617.6 Da
IEP (calculated)
9.295
GRAVY (calculated)
-0.047
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEKNNNKRQ RVKLVPEFSI NDHQDVLVEI LRRLDGPSLC SAACVCRLWS AVARNDSIWE ELCFRQVSPR PSLPLRSVVS ALGGYKRLYF LCIRPVLARL
101: PKIIWSHDQL QLSLSLYCVH YYERLYVGAW HEDAPPSAPP SSLMFLRKPV NVV
101: PKIIWSHDQL QLSLSLYCVH YYERLYVGAW HEDAPPSAPP SSLMFLRKPV NVV
001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
Arabidopsis Description
SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.