CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028159_P001	Maize	cytosol	69.15	78.09
Os03t0196500-00	Rice	cytosol	68.16	76.97
TraesCS4B01G263400.1	Wheat	cytosol	66.67	73.63
TraesCS4D01G263600.1	Wheat	cytosol	66.17	73.48
TraesCS4A01G042900.1	Wheat	cytosol	65.67	71.35
HORVU4Hr1G071100.2	Barley	cytosol, mitochondrion	65.17	70.43
Zm00001d048185_P001	Maize	cytosol	62.19	69.44
CDX86323	Canola	cytosol	36.82	48.37
CDY19964	Canola	cytosol	36.32	48.03
CDY54510	Canola	cytosol	36.32	47.71
KRH73996	Soybean	cytosol	36.32	47.4
KRH14138	Soybean	nucleus	36.32	47.4
Bra036183.1-P	Field mustard	cytosol	35.82	47.37
Bra037508.1-P	Field mustard	cytosol	36.82	47.13
VIT_12s0057g00720.t01	Wine grape	cytosol	39.8	47.06
Bra020714.1-P	Field mustard	cytosol	36.32	46.79
CDY00072	Canola	cytosol	35.32	46.71
CDY48737	Canola	cytosol	35.82	46.15
CDY05699	Canola	cytosol	35.82	46.15
PGSC0003DMT400048479	Potato	cytosol	34.83	46.05
Solyc05g040040.1.1	Tomato	cytosol	34.83	46.05
AT5G48170.1	Thale cress	cytosol	35.82	45.86
Solyc07g047680.1.1	Tomato	cytosol	37.81	45.51
PGSC0003DMT400015675	Potato	cytosol	36.32	44.51
OQU85206	Sorghum	nucleus, plastid	22.89	17.23

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.6.2.3	MapMan:19.2.2.8.1.4.1	UniProt:A0A1Z5SAX4	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0009719	GO:GO:0009740
GO:GO:0009937	GO:GO:0009987	GO:GO:0019005	GO:GO:0048831	InterPro:IPR001810	EnsemblPlants:OQU93068
ProteinID:OQU93068	ProteinID:OQU93068.1	PFAM:PF12937	PANTHER:PTHR12874	PANTHER:PTHR12874:SF10	EnsemblPlantsGene:SORBI_3001G470100
SUPFAM:SSF81383	UniParc:UPI000B8B9E1E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:74304996..74305681

Molecular Weight (calculated)

20528.8 Da

IEP (calculated)

9.405

GRAVY (calculated)

0.101

Length

201 amino acids

Sequence
(BLAST)

001: MPTIQRAEMG GAGAGVPRRP GEAVEVTELQ LRIQLLGGGG GVGGAGSGSY NINDNADILA EILSRLDGRS LAAAACVCRL WAAVARRDAV WEALCLRHVG
101: PPAPPAAAGP ATRAVVAALG GYRRLYRLCL GPALDRLAQA QAQAARAHHL SLSLSLSLFS IDCYERLGGG GASAAGAGKG KPGRQQQPSS LLFLCKPVDV
201: S

Best Arabidopsis Sequence Match ( AT5G48170.1 )
(BLAST)

001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV

Arabidopsis Description

SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.