CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73996	Soybean	cytosol	95.45	95.45
PGSC0003DMT400048479	Potato	cytosol	62.99	63.82
Solyc05g040040.1.1	Tomato	cytosol	61.69	62.5
VIT_12s0057g00720.t01	Wine grape	cytosol	68.83	62.35
PGSC0003DMT400015675	Potato	cytosol	61.69	57.93
Solyc07g047680.1.1	Tomato	cytosol	62.34	57.48
CDX86323	Canola	cytosol	54.55	54.9
CDY54510	Canola	cytosol	54.55	54.9
Bra020714.1-P	Field mustard	cytosol	54.55	53.85
Bra037508.1-P	Field mustard	cytosol	54.55	53.5
CDY19964	Canola	cytosol	52.6	53.29
CDY48737	Canola	cytosol	53.9	53.21
CDY05699	Canola	cytosol	53.9	53.21
AT5G48170.1	Thale cress	cytosol	53.9	52.87
CDY00072	Canola	cytosol	51.95	52.63
Bra036183.1-P	Field mustard	cytosol	51.95	52.63
Zm00001d048185_P001	Maize	cytosol	48.05	41.11
Os03t0196500-00	Rice	cytosol	47.4	41.01
Zm00001d028159_P001	Maize	cytosol	47.4	41.01
TraesCS4B01G263400.1	Wheat	cytosol	48.05	40.66
TraesCS4D01G263600.1	Wheat	cytosol	47.4	40.33
HORVU4Hr1G071100.2	Barley	cytosol, mitochondrion	48.05	39.78
TraesCS4A01G042900.1	Wheat	cytosol	46.75	38.92
OQU93068	Sorghum	cytosol	47.4	36.32
KRH15421	Soybean	cytosol	23.38	25.0
KRH05620	Soybean	cytosol	25.97	22.99
KRH52046	Soybean	cytosol	23.38	20.69
KRH61359	Soybean	cytosol	22.73	19.13

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.6.2.3	MapMan:19.2.2.8.1.4.1	EMBL:ACUP02008492	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EnsemblPlantsGene:GLYMA_14G009000	GO:GO:0000151	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0043161	UniProt:I1M6B2	InterPro:IPR001810	EnsemblPlants:KRH14138	ProteinID:KRH14138
ProteinID:KRH14138.1	PFAM:PF12937	PANTHER:PTHR12874	PANTHER:PTHR12874:SF10	SMART:SM00256	SUPFAM:SSF81383
UniParc:UPI000233B6EA	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:687111..687575

Molecular Weight (calculated)

17761.6 Da

IEP (calculated)

9.481

GRAVY (calculated)

-0.196

Length

154 amino acids

Sequence
(BLAST)

001: MVQQQQHRRE QEKRPRFFIN DNIDILREIL KRLDGPSLGV AACVCRLWCS LTRNDDSLWE HLCFRHVSSP PTASVRAVVV ALGGYKRLYM VCVRPVLSRL
101: GNSERVRKRV WTRHEVQLSL SLFCIDSYER LESGRIPSDA SASSLMFLCN TVNV

Best Arabidopsis Sequence Match ( AT5G48170.1 )
(BLAST)

001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV

Arabidopsis Description

SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.